PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008220481.2

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 176aa MW: 20057.3 Da PI: 5.8144

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008220481.2	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	80.3	3e-25	1	84	18	101
DUF260 18 lapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 +apyfpa++ ++f n+hklFG+ +++k+l+++++++r+ am s+ eAe rardPv G+++ i++l +++++++ el++++++l XP_008220481.2 1 MAPYFPATRFQQFLNAHKLFGVGKITKTLNSVSPQQRSSAMYSVKAEAEYRARDPVGGCYNEIKSLLWKIRTTEDELQHVHSQL 84 59*****************************************************************************99985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.153	1	84	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-22	1	81	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 176 aa Download sequence Send to blast
MAPYFPATRF QQFLNAHKLF GVGKITKTLN SVSPQQRSSA MYSVKAEAEY RARDPVGGCY 60 NEIKSLLWKI RTTEDELQHV HSQLCMFRAG GENAMAHPLE GYEYNVVQDV EYDSQLHHQL 120 QQNIVQEQSG VVENHQEQSN VFDLRDEVVL EQDVNPIQVE GPVIHNSTSQ LQSGKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-17	1	90	28	117	LOB family transfactor Ramosa2.1
5ly0_B	1e-17	1	90	28	117	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008220481.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008220481.2	1e-130	PREDICTED: LOB domain-containing protein 22-like
Swissprot	Q9LRW1	6e-25	LBD22_ARATH; LOB domain-containing protein 22
TrEMBL	A0A251RBT1	3e-99	A0A251RBT1_PRUPE; Uncharacterized protein
STRING	XP_008220481.1	4e-97	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF39760	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13850.1	2e-27	LOB domain-containing protein 22

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]