PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008220563.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 247aa MW: 28043.4 Da PI: 6.1447

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008220563.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.9	1.1e-18	14	61	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT++Ed+ll+d+++ +G g W+++++ g++R++k+c++rw++yl XP_008220563.1 14 RGPWTAQEDKLLADYIRAHGEGKWSSVPKQAGLKRCGKSCRLRWLNYL 61 89********************************************97 PP
2	Myb_DNA-binding	52.6	1e-16	67	111	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w++ XP_008220563.1 67 RGNITQDEEDLIIRLHKLLGNR-WSLIAGRIP-GRTDNEIKNYWNTN 111 7999****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.6E-25	5	64	IPR009057	Homeodomain-like
PROSITE profile	PS51294	24.349	9	65	IPR017930	Myb domain
SuperFamily	SSF46689	5.99E-30	11	108	IPR009057	Homeodomain-like
SMART	SM00717	1.6E-14	13	63	IPR001005	SANT/Myb domain
Pfam	PF00249	3.0E-17	14	61	IPR001005	SANT/Myb domain
CDD	cd00167	1.49E-10	16	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.0E-23	65	114	IPR009057	Homeodomain-like
PROSITE profile	PS51294	17.492	66	116	IPR017930	Myb domain
SMART	SM00717	5.4E-14	66	114	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-15	67	112	IPR001005	SANT/Myb domain
CDD	cd00167	1.18E-11	71	112	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MGRRPCCSKE GVKRGPWTAQ EDKLLADYIR AHGEGKWSSV PKQAGLKRCG KSCRLRWLNY 60 LRPNIKRGNI TQDEEDLIIR LHKLLGNRWS LIAGRIPGRT DNEIKNYWNT NLCKEPPPNN 120 FVPCRPSKEA SSDPQLQSKA EIKLSNVPKY NNQNGESECS EGSLSSLATT REEEDYSSHD 180 LWMNFYTREM SLSQFLDTDF SNLSNLFAEV IVGGYSSTKA MHDDDVDADF GAQLAAFTDL 240 ADEWIMQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	8e-26	14	112	27	124	MYB TRANSFORMING PROTEIN
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008220563.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008220563.1	0.0	PREDICTED: transcription factor WER-like
TrEMBL	A0A251RDC4	1e-157	A0A251RDC4_PRUPE; Uncharacterized protein
STRING	XP_008220563.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF31	34	817

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	5e-62	myb domain protein 5