PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220565.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 279aa    MW: 31611.4 Da    PI: 5.4741
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220565.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.55.7e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed++l+d+vk +G g+W + +r+ g++R++k+c++rw++yl
   XP_008220565.1 14 KGAWTALEDQILIDYVKDHGEGRWGKLSRETGLKRCGKSCRLRWLNYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.81.8e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T++E++l+++++k+lG++ W++Ia +++ gRt++++k++w+++
   XP_008220565.1  67 RGNITEDEEDLIIRLHKLLGNR-WTLIAGRLP-GRTDNEIKNYWNSV 111
                      7999******************.*********.***********987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.04961IPR017930Myb domain
SuperFamilySSF466891.03E-2812108IPR009057Homeodomain-like
SMARTSM007171.7E-141363IPR001005SANT/Myb domain
PfamPF002496.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-221568IPR009057Homeodomain-like
CDDcd001679.27E-111661No hitNo description
PROSITE profilePS5129426.11462116IPR017930Myb domain
SMARTSM007172.1E-1666114IPR001005SANT/Myb domain
PfamPF002495.6E-1567112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.9E-2469115IPR009057Homeodomain-like
CDDcd001674.26E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MGRSYRCDKD GLSKGAWTAL EDQILIDYVK DHGEGRWGKL SRETGLKRCG KSCRLRWLNY  60
LRPEIKRGNI TEDEEDLIIR LHKLLGNRWT LIAGRLPGRT DNEIKNYWNS VLRKKAQESH  120
SERSRNEWKM TKDTEKAVPS LKMDSHFIQN GLTPTSCINN EQLGTNNTLA EPFISGVEAT  180
NMEVKSDSSD GFLPIAREND MTWNFIRDLN AGELGISEFL HTDFSKLCEL NTTIFDCTSG  240
CRNGSLMSTS TAEAPSNLQE WLNDWAADDN CLPEAAFGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-291211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220565.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285438e-99FR828543.1 Rosa rugosa mRNA for putative MYB transcription factor (myb10 gene).
GenBankGU9674428e-99GU967442.1 Rosa rugosa putative MYB transcription factor (MYB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220565.10.0PREDICTED: trichome differentiation protein GL1-like
TrEMBLM5Y7Z70.0M5Y7Z7_PRUPE; Uncharacterized protein
STRINGXP_008220565.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.14e-56myb domain protein 3