PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220568.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 202aa    MW: 23644.7 Da    PI: 8.9579
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220568.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.91.4e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++l+++++ +G+++Wk +a + g++R++k+c++rw +yl
   XP_008220568.1 15 RGSWTAEEDQKLAQVIEIHGPKRWKFVATKAGLNRCGKSCRLRWMNYL 62
                     89********************************************97 PP
2Myb_DNA-binding506.9e-1668113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_008220568.1  68 RGNISDQEEDLILRLHRLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 113
                      78999*****************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.171066IPR017930Myb domain
SuperFamilySSF466892.03E-2913109IPR009057Homeodomain-like
SMARTSM007171.8E-161464IPR001005SANT/Myb domain
PfamPF002491.5E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-241669IPR009057Homeodomain-like
CDDcd001673.41E-111762No hitNo description
PROSITE profilePS5129420.89667117IPR017930Myb domain
SMARTSM007173.1E-1567115IPR001005SANT/Myb domain
PfamPF002491.9E-1468113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.3E-2570118IPR009057Homeodomain-like
CDDcd001671.36E-972113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MIPLSRRSTR KEVNRGSWTA EEDQKLAQVI EIHGPKRWKF VATKAGLNRC GKSCRLRWMN  60
YLRPNIKRGN ISDQEEDLIL RLHRLLGNRW SLIAGRLPGR TDNEIKNYWN SHLSKKIKQR  120
ERQNRAVSKA EQESSDTQNI QVMEVNALTI GREDASKCEE SFKSGFNGDE FFDCSSDEGL  180
LNLEWMNKFL EMDESWFTLH DI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-30121171105MYB PROTO-ONCOGENE PROTEIN
1h8a_C2e-301211724128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220568.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285441e-104FR828544.1 Rosa rugosa mRNA for putative MYB transcription factor (myb11 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220568.11e-148PREDICTED: transcription factor MYB114-like
SwissprotQ388508e-51MYB5_ARATH; Transcription repressor MYB5
TrEMBLA0A251RAS71e-144A0A251RAS7_PRUPE; Uncharacterized protein
STRINGXP_008220568.11e-148(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21483288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.13e-53myb domain protein 5
Publications ? help Back to Top
  1. Ranocha P,Francoz E,Burlat V,Dunand C
    Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion.
    Plant Signal Behav, 2014. 9(11): p. e977734
    [PMID:25531128]