PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220661.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 401aa    MW: 42615.1 Da    PI: 7.2613
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220661.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.33.1e-1760107148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+WT+eEdell +++++ G g+W+t +++ g+ R++k+c++rw +yl
   XP_008220661.1  60 RGPWTPEEDELLSNYINKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 107
                      89******************************99************97 PP
2Myb_DNA-binding46.58.2e-15118158648
                      HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
   XP_008220661.1 118 PDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 158
                      89***************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-2151109IPR009057Homeodomain-like
PROSITE profilePS5129416.55355107IPR017930Myb domain
SuperFamilySSF466899.17E-2957154IPR009057Homeodomain-like
SMARTSM007172.2E-1359109IPR001005SANT/Myb domain
PfamPF002493.0E-1560107IPR001005SANT/Myb domain
CDDcd001673.80E-1162107No hitNo description
PROSITE profilePS5129424.397108162IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-24110163IPR009057Homeodomain-like
SMARTSM007172.7E-13112160IPR001005SANT/Myb domain
CDDcd001671.83E-11118158No hitNo description
PfamPF002491.4E-13118158IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010090Biological Processtrichome morphogenesis
GO:0010468Biological Processregulation of gene expression
GO:0048354Biological Processmucilage biosynthetic process involved in seed coat development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MRNPSSSSSS SSSKAAAAAA AAAATAASIP TKITSSSSSK AAGTSGGSKT PCCIKVGLKR  60
GPWTPEEDEL LSNYINKEGE GRWRTLPKRA GLLRCGKSCR LRWMNYLRPS VKRGQIAPDE  120
EDLILRLHRL LGNRWSLIAG RIPGRTDNEI KNYWNTHLSK KLISQGIDPR THKPLNPDIH  180
SSATVAAADM DNNINKAATV SSSKTNRFSS NTNPSPPPTS EPSEPLAHHQ GAAPNTNGNN  240
GNIVTNIANK ENGYLVDDQE LGTMVHGYAN MTTSDHASAA AMGTLSLRSN GSNHGGALLG  300
GNEEDDDMNC CADDVFSSFL NSLINEDPFA GQHHLQQQVL LQNGNNAHNA AAVDGSDHHV  360
PLISSGAGAT APSTFGWESA VLMSSAFIQN DHHRVLNDQT E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-25581622105MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-25581622105C-Myb DNA-Binding Domain
1msf_C2e-25581622105C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220661.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ0201121e-152KJ020112.1 Malus hybrid cultivar MYB12a protein (MYB12a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220661.10.0PREDICTED: transcription repressor MYB5
TrEMBLM5VYH30.0M5VYH3_PRUPE; Uncharacterized protein
STRINGXP_008220661.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38943064
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.18e-79myb domain protein 5