PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220723.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family B3
Protein Properties Length: 106aa    MW: 11931.8 Da    PI: 11.1426
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220723.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.51.6e-1510851385
                    TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
              B3 13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgr.yvltkGWkeFvkangLkegDfvvFkld 85
                    ++ l++p +fa+++g++ ++   ++l+d+sg sW + l+     +++s r  + t+ W +F +an+Lk gD+++F l+
  XP_008220723.1 10 KAYLTIPARFARSNGIVATS--RIILKDPSGISWPLILSRwesiSRGSHRiAIRTNEWYKFYEANKLKNGDVCTFNLK 85
                    4679***********99766..6***************6647664444445667799******************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010192.1E-6193IPR003340B3 DNA binding domain
PROSITE profilePS5086312.7031106IPR003340B3 DNA binding domain
CDDcd100171.59E-15190No hitNo description
SuperFamilySSF1019363.14E-16488IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.3E-165104IPR015300DNA-binding pseudobarrel domain
PfamPF023625.6E-131085IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MKKSHGDPHK AYLTIPARFA RSNGIVATSR IILKDPSGIS WPLILSRWES ISRGSHRIAI  60
RTNEWYKFYE ANKLKNGDVC TFNLKPVSSK SGSKSARVMD VQITRG
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220723.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220723.11e-73PREDICTED: B3 domain-containing protein REM3
TrEMBLA0A314UVI62e-54A0A314UVI6_PRUYE; B3 domain-containing protein REM8-like
STRINGXP_008220723.15e-73(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14574917
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31620.14e-08B3 family protein