PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220818.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 97aa    MW: 10872.3 Da    PI: 10.0693
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220818.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-091154344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     +WT+   +l+ +a + + ++   +W+ +a+ +g g++ +++k ++
   XP_008220818.1 11 SWTPKQNKLFEKALAVYDKDtqdRWHNVAKAVG-GKSVEEVKRHY 54
                     7********************************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.44761IPR017884SANT domain
SMARTSM007173.2E-7860IPR001005SANT/Myb domain
SuperFamilySSF466891.09E-121066IPR009057Homeodomain-like
PfamPF002495.8E-71154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-41159IPR009057Homeodomain-like
CDDcd001674.12E-71254No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 97 aa     Download sequence    Send to blast
MASLSSSRNS SWTPKQNKLF EKALAVYDKD TQDRWHNVAK AVGGKSVEEV KRHYEILVQD  60
LMHIESGQVP IPNYKGTGSS GSRGIGDEQR LMKNLKI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-33497192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220818.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224604.23e-67protein RADIALIS-like 6
RefseqXP_008220818.13e-67PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1733e-43RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A251R9E38e-66A0A251R9E3_PRUPE; Uncharacterized protein
STRINGXP_008220818.11e-66(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-45RAD-like 6