PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220898.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family FAR1
Protein Properties Length: 367aa    MW: 42215.6 Da    PI: 6.7428
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220898.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR172.59.3e-2348134190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fYn+YA+e+GFsvr  +skks ++ge++++++vC+keg+ ++e++     +r+r + r +Cka+l+v k+k g ++vt +e+ H+H+++
  XP_008220898.1  48 DFYNQYAREAGFSVRSYSSKKS-KDGEVIRKEYVCNKEGSWSTETSG--VVKRRRGVGRESCKARLVVVKSKYGGYVVTIFEEAHSHPMT 134
                     6*****************9999.8889****************9988..77888999******************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.0E-2048134IPR004330FAR1 DNA binding domain
PfamPF105511.6E-25256340IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MEANNGILLP METDPETNPS VSIFYPQVIG EFTPFQGQQF ETLEEVYDFY NQYAREAGFS  60
VRSYSSKKSK DGEVIRKEYV CNKEGSWSTE TSGVVKRRRG VGRESCKARL VVVKSKYGGY  120
VVTIFEEAHS HPMTTPRRRH LLKSHRRISG VNQLVAQQLI SVNVSTHQQY DILATQAGGI  180
ENVGFTQQDM YNSNRDRRMK IKGHDGEMLF DHFMNEQEKN PGFIFKVETN IEHKITRCFW  240
ADAISRQSYK FYGDAVIFDT TYNTNRYCMI FAPIMGVNNH GQTIIFSGAF LSDETADSFI  300
WLFREFLRAM PGDAPKIIIT DQDPAMTKAI SEALPNTFHR YLDSAEDMAL INYVWHVKEA  360
LKERDDF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220898.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220898.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2P6QU811e-135A0A2P6QU81_ROSCH; Putative transcription factor FAR family
STRINGXP_008220898.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14110414
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-56FAR1-related sequence 5