PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008220924.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 408aa    MW: 46093.6 Da    PI: 4.5538
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008220924.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.71e-34211122102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k ye+++d++ +++iswse+g+sfv++d+++f+  +LpkyFkhsnf+SF+RQLn+YgF+k+++++         w F+++ F +g+k+ll++
  XP_008220924.1  21 FLRKCYEMVDDNDADSIISWSETGDSFVIWDMTQFSILLLPKYFKHSNFSSFMRQLNIYGFRKIDSDR---------WVFANEGFIRGQKHLLKN 106
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i r+k+
  XP_008220924.1 107 ISRRKH 112
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.3E-5217110IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.6E-3617110IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.99E-3417110IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000562.0E-182144IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3021110IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-185971IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406084IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-187284IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MLKSAGKSGD GSGSGGSVAP FLRKCYEMVD DNDADSIISW SETGDSFVIW DMTQFSILLL  60
PKYFKHSNFS SFMRQLNIYG FRKIDSDRWV FANEGFIRGQ KHLLKNISRR KHPQGTDQRK  120
ALQQKDNPDG PFENIVENGL WREVENLKTD KVALKQELVK LRQHQEISEN NLLLLRNRLR  180
GMEKNQQQML SFLVMAMQSP GFLVQLLQPK ENSWRIAEPG NMLEQGVDDG IPITSDGAIV  240
RYQPPVDEAP KPILAANSGS DKQTEFDSYI DGMNDFVVNP DFMKMLMDEK LSSLENQAPY  300
TLPDISDDGA WEQLLLASPF LEDIEATKED GKETVDSRME VESTASELQE SQNFDTLIEQ  360
MKKSQNFASE STVYGSNVES SQNLEHITEQ MGYLASDSNS KRGTQSGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-25911017129Heat shock factor protein 1
5d5v_B8e-25911017129Heat shock factor protein 1
5d5v_D8e-25911017129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008220924.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008220924.10.0PREDICTED: heat stress transcription factor A-8
TrEMBLM5XEQ20.0M5XEQ2_PRUPE; Uncharacterized protein
STRINGXP_008220924.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104192937
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67970.11e-104heat shock transcription factor A8