PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008221063.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 506aa    MW: 56101.3 Da    PI: 7.0125
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008221063.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.8e-17160206148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT eEd +l+++vkq+G + W+ Ia+++  gR +kqc++rw+++l
   XP_008221063.1 160 KGQWTDEEDRKLIRLVKQYGVRKWAQIAEKLV-GRAGKQCRERWHNHL 206
                      799*****************************.*************97 PP
2Myb_DNA-binding57.53.1e-18212254145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      +++WT+eE+ +lv+a+++ G++ W+ Ia++++ gRt++ +k++w+
   XP_008221063.1 212 KDSWTEEEETILVEAHTEVGNR-WAEIAKRIP-GRTENAIKNHWN 254
                      679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.073155210IPR017930Myb domain
SuperFamilySSF466893.16E-30158253IPR009057Homeodomain-like
SMARTSM007173.1E-17159208IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.8E-28161214IPR009057Homeodomain-like
PfamPF139217.1E-20163220No hitNo description
CDDcd001675.02E-16163206No hitNo description
PROSITE profilePS5129420.842211261IPR017930Myb domain
SMARTSM007178.7E-17211259IPR001005SANT/Myb domain
CDDcd001676.04E-13214257No hitNo description
Gene3DG3DSA:1.10.10.606.4E-21215259IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MEGEGGGEEG GGGYGVYGLI NNTQPHHPHH HHQNMHRPGP PLTAIDRFLW GSQSNFSHQN  60
NASSKENVVS TNGLFGFSSF GGAIGHEASC WPSYGAGAQY PQEVSFLDGL LGDHGEALMM  120
SWSGQAEQNP NTGFIEEAKV SERRVGKRAR KGLTAAALIK GQWTDEEDRK LIRLVKQYGV  180
RKWAQIAEKL VGRAGKQCRE RWHNHLRPDI KKDSWTEEEE TILVEAHTEV GNRWAEIAKR  240
IPGRTENAIK NHWNATKRRQ NSRRKNRQAE GKDGNNNKKP QSSILQNYIR SKNLMSNNNN  300
NNNNNNNSSP NVSTISNNTP TSSSTLSHEN PSKTHLNILA TETSDQSTTS NCCDSPLNLG  360
DTLYNDEELH FMQTFFTNNV HTFNPHQQQP SHSIDSSNNS NNIGLIVSPV EPTQNAINPT  420
TSTTPTPLYS DLYLSYLLNG TANSSSSFSS TDHHHLGFHN TSMGYLMAHD QYHEAAAASS  480
NEKGEMDLIE MVSSPQFAQG TNRTSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-441582602104C-Myb DNA-Binding Domain
1msf_C1e-441582602104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008221063.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221063.10.0PREDICTED: myb-like protein A
TrEMBLM5WL970.0M5WL97_PRUPE; Uncharacterized protein
STRINGXP_008221063.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.13e-58myb domain protein 119