PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008221083.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 294aa    MW: 31474 Da    PI: 8.8558
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008221083.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.88e-111255445
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     W+ e d+ + +a + ++ +   +W++Ia+ ++ g+t +++k+++ 
   XP_008221083.1 12 WSREQDKAFENALATYPEDssdRWEKIAADVP-GKTIEEIKHHYE 55
                     ********************************.**********96 PP
2Myb_DNA-binding33.21.2e-10122166347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+  + l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
   XP_008221083.1 122 AWTEKYHRLFLLGLEKYGKGDWRSISRNFVVTRTPTQVASHAQKY 166
                      6*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.391762IPR017884SANT domain
SMARTSM007173.4E-9860IPR001005SANT/Myb domain
SuperFamilySSF466893.16E-111065IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.5E-51161IPR009057Homeodomain-like
CDDcd001672.46E-91258No hitNo description
PfamPF002495.5E-91255IPR001005SANT/Myb domain
PROSITE profilePS5129414.565114171IPR017930Myb domain
SuperFamilySSF466894.76E-16117172IPR009057Homeodomain-like
TIGRFAMsTIGR015572.7E-16119169IPR006447Myb domain, plants
SMARTSM007174.5E-7119169IPR001005SANT/Myb domain
PfamPF002491.4E-8122166IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-8122165IPR009057Homeodomain-like
CDDcd001679.14E-8122167No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MTVDEAGSSS LWSREQDKAF ENALATYPED SSDRWEKIAA DVPGKTIEEI KHHYELLVDD  60
INQIEAGFVP LPCYNSSSEG STSHASDEGT NKKGGHSGNY SSESNHGTKA SRADQERRKG  120
IAWTEKYHRL FLLGLEKYGK GDWRSISRNF VVTRTPTQVA SHAQKYFIRL NSMNKDRRRS  180
SIHDITSVNN GDISSPQGPI TGQANGSAVG SSGKSTKQSP AGPPGPGVGM YGAPTIGQPI  240
GGPLVSAVGT PVNLPAGPPH MAYGLRAPVP GGVVPGPPMN MVPMTYPMPH TSHR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A8e-19777676RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008221083.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221083.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN61e-125SRM1_ARATH; Transcription factor SRM1
TrEMBLM5XEU60.0M5XEU6_PRUPE; Uncharacterized protein
STRINGXP_008221083.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46943358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-119MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]