PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008221326.2
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MIKC_MADS
Protein Properties Length: 202aa    MW: 23411.6 Da    PI: 9.9918
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008221326.2genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.15.6e-29959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien +nrqvt+skRrng++KKA+EL vLCda v++i++ss+gk++ey+s
  XP_008221326.2  9 KRIENATNRQVTYSKRRNGLFKKAHELTVLCDATVSLIMVSSSGKIHEYIS 59
                    79***********************************************86 PP
2K-box84.42.4e-2872167296
           K-box   2 qkssgksleeakaeslqqelakLkkeienLqreqRhl.lGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 
                     qk++g++ +++++e +q++l+kLk+ +++Lq+++R++ lGe+L+++s+ eL+ +eq++e ++  iR++K +++ +qi++++kk +++ e n++L+
  XP_008221326.2  72 QKTKGVDIWSSHYEAMQEHLKKLKEVNRSLQKQIRQRvLGECLNDMSFDELRGVEQEMEGAVDVIRKRKIRMISNQIDTTKKKLRSATEMNRNLH 166
                     6788999***************************98538******************************************************98 PP

           K-box  96 k 96 
                     +
  XP_008221326.2 167 E 167
                     5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.497161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.19E-35296IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-28323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
CDDcd002652.93E-37380No hitNo description
PfamPF003198.2E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004043.1E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-1882167IPR002487Transcription factor, K-box
PROSITE profilePS5129714.26784182IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MTRGKIQIKR IENATNRQVT YSKRRNGLFK KAHELTVLCD ATVSLIMVSS SGKIHEYISP  60
STTTKQFFDQ FQKTKGVDIW SSHYEAMQEH LKKLKEVNRS LQKQIRQRVL GECLNDMSFD  120
ELRGVEQEME GAVDVIRKRK IRMISNQIDT TKKKLRSATE MNRNLHEFDA RDDTHYRLVE  180
NGGEDYESAF GYSSNGGPRI FA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-15159159MEF2 CHIMERA
6byy_B4e-15159159MEF2 CHIMERA
6byy_C4e-15159159MEF2 CHIMERA
6byy_D4e-15159159MEF2 CHIMERA
6bz1_A5e-15159159MEF2 CHIMERA
6bz1_B5e-15159159MEF2 CHIMERA
6bz1_C5e-15159159MEF2 CHIMERA
6bz1_D5e-15159159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008221326.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM2433680.0KM243368.1 Prunus pseudocerasus APETALA3-like protein transcript variant 1 mRNA, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221326.21e-151PREDICTED: floral homeotic protein DEFICIENS
SwissprotE0CPH48e-94AP3_VITVI; Agamous-like MADS-box protein AP3
TrEMBLA0A251R9151e-140A0A251R915_PRUPE; Uncharacterized protein
STRINGXP_008221326.11e-149(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.15e-81MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]