PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008221346.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family TALE
Protein Properties Length: 605aa    MW: 67608.2 Da    PI: 5.869
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008221346.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox27.36.4e-094244562254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp+ +e+  LA+++gLt +qV +WF N R +
  XP_008221346.1 424 LPYPKDSEKIMLARQTGLTRNQVANWFINARVR 456
                     69*****************************88 PP
2BELL119.71.3e-38282353172
            BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                     erq+lq+kk+kLls+l+eVd+rYkqy++q+q+v+s F+ vag g+a pYt+lAl+aiSrhFr+L+dai++qi
  XP_008221346.1 282 ERQDLQNKKTKLLSMLDEVDRRYKQYYQQMQVVVSYFDKVAGNGAAGPYTALALQAISRHFRSLRDAIKGQI 353
                     799*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005743.4E-57203351IPR006563POX domain
PfamPF075268.6E-49209349IPR006563POX domain
PROSITE profilePS5007111.726397460IPR001356Homeobox domain
SMARTSM003891.4E-9400464IPR001356Homeobox domain
CDDcd000861.09E-11400461No hitNo description
SuperFamilySSF466891.67E-16401468IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-26403466IPR009057Homeodomain-like
PfamPF059205.8E-16417456IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 605 aa     Download sequence    Send to blast
MATYFQNLSN QNLLNPSYAG DEKLASYPEP PANMMMYLNQ SSYAAGSYSE VLSGGSFSPH  60
KYADSDGVRN EMMFIPPTSD QARDCVTGDS LIGKRNIQDH GLSLSLASTQ IPPAVSLPSF  120
QYQYPNPSLS SVLSTSPMLG KGEIYRKGDE YNQSEEFKNF ESLTSGFYGG GGHETVKTQS  180
LYNPMCSVGS KEMHSEAYLY DSLGSASTML SSKYLKAAQQ LLDEAVNVRK ALKQSRLNKH  240
QNSKRIGFDG SKETDGNDQH LTRSSDPSES STISTLELSP AERQDLQNKK TKLLSMLDEV  300
DRRYKQYYQQ MQVVVSYFDK VAGNGAAGPY TALALQAISR HFRSLRDAIK GQIQVARKRL  360
GEQDSSSDGQ GGVIPRLRYV DQQLRQQRAF QQLGGMQHAW RPQRGLPESS VAILRAWLFE  420
HFLLPYPKDS EKIMLARQTG LTRNQVANWF INARVRLWKP MIEEMYKEEF GDLDMDSKSS  480
PENVLKEEAR AEFSASEDRK EELQESMISA TADSNEPGQV QKSGHSLNHN AVVTYDISGL  540
DQFAVGSNEL SLALNLRHCE EHDGFPSSTG SHVRVHDDAA ASLDCHYEDP EQQQLIQVWQ  600
YPPVT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A1e-14406463158Homeobox protein Meis1
4xrs_B1e-14406463158Homeobox protein Meis1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008221346.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221346.10.0PREDICTED: BEL1-like homeodomain protein 3
RefseqXP_008221347.10.0PREDICTED: BEL1-like homeodomain protein 3
SwissprotQ9FWS91e-120BLH3_ARATH; BEL1-like homeodomain protein 3
TrEMBLA0A251RBU20.0A0A251RBU2_PRUPE; Uncharacterized protein
STRINGXP_008221346.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21463179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75410.22e-97BEL1-like homeodomain 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]