PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008221604.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 515aa MW: 55048.6 Da PI: 6.497

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008221604.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.4	3.6e-39	152	212	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG +rnvPvG+grrknk+ss XP_008221604.1 152 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGIMRNVPVGAGRRKNKNSS 212 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	144	209	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.7E-32	154	210	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.798	156	210	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	158	194	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 515 aa Download sequence Send to blast
MSSESEGPTI KLFGKTIPLA LAPLNHEASS AIDESCGTFD SDIAATACGG GVEDCSDDKQ 60 KLSSSATTNS LEGNSTRVDK ETISEKELTA EKQGDDTSDQ ITEDLKAPTT SSGISENPKT 120 PSVDRETSSL KSSNNGDQSE ASCSQEKTLK KPDKILPCPR CNSMDTKFCY YNNYNVNQPR 180 HFCKNCQRYW TAGGIMRNVP VGAGRRKNKN SSASQYRHML MSDALQTARA SAANGAHNTT 240 LGSNGTVLTF GSDSPLCESM ASVLNLAEQA QNCTQSGFHR PEQRIVVSSI PGDNRDAHSS 300 GSSITASNSS ERGGKVGLQE PAIKSCQSFP PQVPCFPGSP WPYPWNSAQW PSGMPPPPFC 360 HSGFPISFYP APPCWGCTVP DSWNLPSLSS PSSTLSHCAT SSGPNSPTLG KHSRDGDILN 420 AASSQNEDHA KNNTSDRCVW IPKTLRIDDP SEAAKSSIWA TLGIKNEKGN CTNEGGLFRA 480 FQSKGDEKNH AVEASPVLQA NPAALSRSLN FHERT

Sequence ? help Back to Top

Protein Sequence Length: 515 aa Download sequence Send to blast

MSSESEGPTI KLFGKTIPLA LAPLNHEASS AIDESCGTFD SDIAATACGG GVEDCSDDKQ  60
KLSSSATTNS LEGNSTRVDK ETISEKELTA EKQGDDTSDQ ITEDLKAPTT SSGISENPKT  120
PSVDRETSSL KSSNNGDQSE ASCSQEKTLK KPDKILPCPR CNSMDTKFCY YNNYNVNQPR  180
HFCKNCQRYW TAGGIMRNVP VGAGRRKNKN SSASQYRHML MSDALQTARA SAANGAHNTT  240
LGSNGTVLTF GSDSPLCESM ASVLNLAEQA QNCTQSGFHR PEQRIVVSSI PGDNRDAHSS  300
GSSITASNSS ERGGKVGLQE PAIKSCQSFP PQVPCFPGSP WPYPWNSAQW PSGMPPPPFC  360
HSGFPISFYP APPCWGCTVP DSWNLPSLSS PSSTLSHCAT SSGPNSPTLG KHSRDGDILN  420
AASSQNEDHA KNNTSDRCVW IPKTLRIDDP SEAAKSSIWA TLGIKNEKGN CTNEGGLFRA  480
FQSKGDEKNH AVEASPVLQA NPAALSRSLN FHERT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008221604.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008221604.1	0.0	PREDICTED: cyclic dof factor 1
TrEMBL	A0A314ZD71	0.0	A0A314ZD71_PRUYE; Cyclic dof factor 1
STRING	XP_008221604.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF625	34	147

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-101	cycling DOF factor 2