PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008221688.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 343aa    MW: 38825.1 Da    PI: 4.5995
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008221688.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.45.8e-19106160357
                     --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                     k++++t +q++ Le+ Fe ++++  e++++LAk+lgL+ rqV +WFqNrRa+ k+
  XP_008221688.1 106 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKN 160
                     56689***********************************************995 PP
2HD-ZIP_I/II1278.2e-41106197293
     HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                     kkrrl+ +qv++LE++Fe e+kLeperK++la+eLglqprqva+WFqnrRAR+k+kqlEk+y++Lk+++d+lk+++++L ke+ +L++e+++
  XP_008221688.1 106 KKRRLTVDQVQFLEKNFEVENKLEPERKAQLAKELGLQPRQVAIWFQNRRARFKNKQLEKEYDSLKASFDKLKADHDNLLKENGSLKNEIDS 197
                     9**************************************************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-1993163IPR009057Homeodomain-like
PROSITE profilePS5007117.313101161IPR001356Homeobox domain
SMARTSM003896.3E-18103165IPR001356Homeobox domain
CDDcd000861.15E-17104162No hitNo description
PfamPF000462.4E-16106159IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-19108169IPR009057Homeodomain-like
PRINTSPR000312.3E-6132141IPR000047Helix-turn-helix motif
PROSITE patternPS000270136159IPR017970Homeobox, conserved site
PRINTSPR000312.3E-6141157IPR000047Helix-turn-helix motif
PfamPF021831.5E-16161202IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MSGGKLYSAS DMNVIFQNEK LPCSSDVLES IWVPTSSSSF HVPLCKQNGE TFINRRKIEK  60
TPPSSNSVVN FESASGEDSL DRSFFRPIDK ENGDDDYDAS LNQPGKKRRL TVDQVQFLEK  120
NFEVENKLEP ERKAQLAKEL GLQPRQVAIW FQNRRARFKN KQLEKEYDSL KASFDKLKAD  180
HDNLLKENGS LKNEIDSLKD MLILKDKGKP GKRNLELHDA NNIILSDVKP QSATPNAASD  240
NVPMVVCKQE DASSAKSDVF DSDSPHCTEN HSSLLEPADS SHVFEPAEQS DFSQDEDDDL  300
SRTLLPPPYF LKLEDSCYDE PPASSSNFVF PMEDQQPFCF WPY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161RRARFKNKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008221688.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008221688.10.0PREDICTED: homeobox-leucine zipper protein HAT5 isoform X1
TrEMBLA0A315A3D80.0A0A315A3D8_PRUYE; Homeobox-leucine zipper protein HAT5 isoform X3
STRINGXP_008221688.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15003499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69780.13e-39HD-ZIP family protein