PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008221733.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NAC

Protein Properties

Length: 483aa MW: 53685.9 Da PI: 7.2483

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008221733.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168	3.1e-52	19	149	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 + pGfrFhPtdeelv +yLk+k+++++l++ e ik++diyk++PwdLpk ++++ekewyf+++rd+ky++++r+nr+t +g+Wkatg+d++++s+ XP_008221733.1 19 MLPGFRFHPTDEELVGFYLKRKIQQRPLSI-ELIKQLDIYKFDPWDLPKLAASGEKEWYFYCPRDRKYRNSTRPNRVTGAGFWKATGTDRPIYSS 112 579*************************.89***********8888899***********************************9 PP NAM 96 ....kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ +glkk+Lvfykgra kg+ktdW+mhe+rl XP_008221733.1 113 egacSSKCIGLKKSLVFYKGRAAKGVKTDWMMHEFRL 149 77776777*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-57	17	183	IPR003441	NAC domain
PROSITE profile	PS51005	56.11	19	183	IPR003441	NAC domain
Pfam	PF02365	2.4E-25	21	149	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MDERSDMNII GGDKMDEVML PGFRFHPTDE ELVGFYLKRK IQQRPLSIEL IKQLDIYKFD 60 PWDLPKLAAS GEKEWYFYCP RDRKYRNSTR PNRVTGAGFW KATGTDRPIY SSEGACSSKC 120 IGLKKSLVFY KGRAAKGVKT DWMMHEFRLP SLTDSLPPKR SSSFMDKTIP ANDSWAICRI 180 FKKTNSSHAH QRALSHHSWV SVLPETNTYD DHMLGSKAAH SATHHHHQHE FSSERMPLTS 240 KTNSTTNFCG NNNNDIQISS TTSSMSPLDI YTNSSYKPVN PLMMGCNIKL PYQYFPISNS 300 NGDYFSSTPS FTFSSSPLET PSGPVAKCTV DVSSLLLNMS SSMLGDYNGS NSINKASAES 360 TNFEFSTNTG SQDQCNGGFS SMTLPHHHEV MQGNNNMGNG HDTVVGLIKN NISNVNSDVT 420 EDADDQRWET SVRSNTGVPL MMSNSFPLPL NIGGGGGGDA WKSSLTWESS PCPSEMSTTR 480 CYT

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MDERSDMNII GGDKMDEVML PGFRFHPTDE ELVGFYLKRK IQQRPLSIEL IKQLDIYKFD  60
PWDLPKLAAS GEKEWYFYCP RDRKYRNSTR PNRVTGAGFW KATGTDRPIY SSEGACSSKC  120
IGLKKSLVFY KGRAAKGVKT DWMMHEFRLP SLTDSLPPKR SSSFMDKTIP ANDSWAICRI  180
FKKTNSSHAH QRALSHHSWV SVLPETNTYD DHMLGSKAAH SATHHHHQHE FSSERMPLTS  240
KTNSTTNFCG NNNNDIQISS TTSSMSPLDI YTNSSYKPVN PLMMGCNIKL PYQYFPISNS  300
NGDYFSSTPS FTFSSSPLET PSGPVAKCTV DVSSLLLNMS SSMLGDYNGS NSINKASAES  360
TNFEFSTNTG SQDQCNGGFS SMTLPHHHEV MQGNNNMGNG HDTVVGLIKN NISNVNSDVT  420
EDADDQRWET SVRSNTGVPL MMSNSFPLPL NIGGGGGGDA WKSSLTWESS PCPSEMSTTR  480
CYT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-54	5	188	2	170	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-54	5	188	2	170	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-54	5	188	2	170	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-54	5	188	2	170	NO APICAL MERISTEM PROTEIN
4dul_A	2e-54	5	188	2	170	NAC domain-containing protein 19
4dul_B	2e-54	5	188	2	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008221733.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008221733.1	0.0	PREDICTED: protein FEZ
Swissprot	Q9ZVH0	1e-102	FEZ_ARATH; Protein FEZ
TrEMBL	A0A314ZQ61	0.0	A0A314ZQ61_PRUYE; Protein FEZ
STRING	XP_008221733.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2013	34	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-100	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]