PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008221876.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

YABBY

Protein Properties

Length: 221aa MW: 24983.3 Da PI: 5.3555

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008221876.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	206.3	1.1e-63	6	171	2	169
YABBY 2 dvfssseqvCyvqCnfCntilavsvPstslfkv.vtvrCGhCtsllsvnlakas....qllaaeshldeslkeelleelkveeenlksnvekees 91 ++f+ ++q+CyvqC+fC til+vsvP +sl+++ vtvrCGhC+ llsvn++kas +lla+ + de+ +e lee ++n k ++++ XP_008221876.1 6 HLFDLPDQICYVQCGFCATILLVSVPCSSLSMLaVTVRCGHCSCLLSVNMMKASfvplHLLASLTQ-DEQREELCLEEVD--KQNNKPLDMRS-- 95 7899************************98659************998666566666665.4444443444333..33333333333.. PP YABBY 92 astsvsseklsenedee.vprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169 +s vs+ s+ne+e+ ++ p v++PPekrqr+Psayn fikeei+r+ka+nP+++h+eafs+aaknWa fP+i ++ XP_008221876.1 96 PSMVVSN---SDNEEEDtISMNPIVNKPPEKRQRAPSAYNHFIKEEIRRLKAENPSMTHKEAFSTAAKNWAQFPPIQYK 171 3333333...44555550555555*************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	2.0E-61	11	170	IPR006780	YABBY protein
SuperFamily	SSF47095	4.19E-9	116	167	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.7E-6	119	167	IPR009071	High mobility group box domain
CDD	cd00084	2.17E-4	126	167	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:0048481	Biological Process	plant ovule development
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MSAVNHLFDL PDQICYVQCG FCATILLVSV PCSSLSMLAV TVRCGHCSCL LSVNMMKASF 60 VPLHLLASLT QDEQREELCL EEVDKQNNKP LDMRSPSMVV SNSDNEEEDT ISMNPIVNKP 120 PEKRQRAPSA YNHFIKEEIR RLKAENPSMT HKEAFSTAAK NWAQFPPIQY KGDGPDGESC 180 TSQREENVTW DSDVPEAHED GKVFRERKAP RHSIWARTPF E

Functional Description ? help Back to Top
Source	Description
UniProt	Essential for the formation and the abaxial-adaxial asymmetric growth of the ovule outer integument. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:9093862, ECO:0000269\|PubMed:9118807}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008221876.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Autoinduction down-regulated by SUP in adaxial region of the ovule outer integument. Negatively and spatially regulated by HLL, ANT, BELL1, NZZ/SPL and SUP. {ECO:0000269\|PubMed:10601041, ECO:0000269\|PubMed:12183380, ECO:0000269\|PubMed:12183381}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KP283468	7e-71	KP283468.1 Prunus armeniaca INNER NO OUTER (INO) gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008221876.1	1e-166	PREDICTED: axial regulator YABBY 4
Swissprot	Q9LDT3	2e-79	YAB4_ARATH; Axial regulator YABBY 4
TrEMBL	M5XQH8	1e-163	M5XQH8_PRUPE; Uncharacterized protein
STRING	XP_008221876.1	1e-166	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6144	28	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G23420.1	9e-82	YABBY family protein

Publications ? help Back to Top
Lora J,Hormaza JI,Herrero M Transition from two to one integument in Prunus species: expression pattern of INNER NO OUTER (INO), ABERRANT TESTA SHAPE (ATS) and ETTIN (ETT). New Phytol., 2015. 208(2): p. 584-95 [PMID:25991552] Skinner DJ,Brown RH,Kuzoff RK,Gasser CS Conservation of the role of INNER NO OUTER in development of unitegmic ovules of the Solanaceae despite a divergence in protein function. BMC Plant Biol., 2016. 16(1): p. 143 [PMID:27350128] Simon MK,Skinner DJ,Gallagher TL,Gasser CS Integument Development in Arabidopsis Depends on Interaction of YABBY Protein INNER NO OUTER with Coactivators and Corepressors. Genetics, 2017. 207(4): p. 1489-1500 [PMID:28971961]