PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008222038.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family C2H2
Protein Properties Length: 203aa    MW: 22780.1 Da    PI: 7.7938
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008222038.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.000122850123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    y+C+ C++ Fs+   L  H++ H
  XP_008222038.1 28 YECTFCKRGFSNAQALGGHMNIH 50
                    99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.3E-72555No hitNo description
Gene3DG3DSA:3.30.160.601.5E-52554IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00992850IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.5722855IPR007087Zinc finger, C2H2
PROSITE patternPS0002803050IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051973Biological Processpositive regulation of telomerase activity
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MESDQAIQEN SEQVSDDKQG ASQAAKSYEC TFCKRGFSNA QALGGHMNIH RKDKAKLKQV  60
SSSNTIETKQ HQQQQRLLDI PKMPSSYSSP ILPTINSSEH NKLKPSHDAE RNTSTWPWFL  120
NKEGDATMRH NIDPNHLSHQ VQQQLPLFSQ APSQARVHEN PGLQQAHGDQ GLQPSGSELD  180
LELRLGPERQ DSSSKANTTR KFF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008222038.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM3704934e-72HM370493.1 Malus domestica zinc finger protein (SUP11) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222038.11e-150PREDICTED: probable transcriptional regulator RABBIT EARS
TrEMBLA0A314V2J71e-135A0A314V2J7_PRUYE; Putative transcriptional regulator RABBIT EARS
STRINGXP_008222038.11e-150(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.16e-17C2H2 family protein