PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008222228.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

NF-YC

Protein Properties

Length: 309aa MW: 34672.4 Da PI: 4.0427

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008222228.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	37.6	4.7e-12	102	182	18	97
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivp 97 + e+P +r+k+i+k d ++++ +ea l+s + +lf+ l+ rs a e+kr+ +k + av+r + dfl d+ p XP_008222228.1 102 RPEFPNTRVKRIMKLDRGINKVNSEALLLVSCSAQLFLEFLAERSAEVATEKKRKIVKLEHMRVAVKRHRpTSDFLWDELP 182 5689************************************************************9975389***987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.35E-15	50	169	IPR009072	Histone-fold
Gene3D	G3DSA:1.10.20.10	9.7E-16	96	168	IPR009072	Histone-fold
Pfam	PF00808	9.5E-17	104	167	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MAEEQNAARE ADNIAGEENA EQEEENAEQE EEKAEQAEEN AEQAEEKAEQ AEDDAEQEED 60 NAEQEEDNPE NAVENATVKE KAKVAQEEEN AEPIRSENSQ IRPEFPNTRV KRIMKLDRGI 120 NKVNSEALLL VSCSAQLFLE FLAERSAEVA TEKKRKIVKL EHMRVAVKRH RPTSDFLWDE 180 LPVPCQPSDH QPTDRSSSRT VSHAPAPARR DRSRSRAVSD KPAPAGTRRI DHFFLTKEIP 240 IQTEQSLIET EEAPIETEEA PIETDESPIE TDEASIETEE ASIEIDEAPI VTDEGPIETG 300 EGPIETNES

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008222228.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222228.1	0.0	PREDICTED: dr1-associated corepressor
TrEMBL	M5XR88	1e-148	M5XR88_PRUPE; Uncharacterized protein
STRING	XP_008222228.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11105	31	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	7e-42	nuclear factor Y, subunit C13