PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008222403.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bHLH

Protein Properties

Length: 206aa MW: 22466.5 Da PI: 5.7923

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008222403.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31	4.5e-10	53	100	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + ++ + Ka +L + ++Y++ Lq XP_008222403.1 53 SHSLAERARREKISERMKLLQSLVPGC----DQINGKAHVLDEIIKYVQLLQ 100 8***********************9....9***************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-15	47	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.04E-9	47	104	No hit	No description
PROSITE profile	PS50888	14.786	49	99	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	4.0E-15	50	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.8E-8	53	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	7.3E-7	55	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MVSEEEGERK GKKQRKQNGS EAKKQSKFAA ASAEGVQRDG VRVKARRGEA TDSHSLAERA 60 RREKISERMK LLQSLVPGCD QINGKAHVLD EIIKYVQLLQ NQVECLAAKL AFVDAMLYDD 120 CELNPSTNPC ASDQRLCCLE PPLPFVLEPP CSVQFRSLAD AAPPGTLASL LLTEDQKASL 180 IPQAQDGGSF EDIGKQPAGL DHSCTF

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008222403.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222403.1	1e-150	PREDICTED: transcription factor bHLH137-like
Swissprot	Q93W88	7e-36	BH137_ARATH; Transcription factor bHLH137
TrEMBL	A0A251R1H1	1e-123	A0A251R1H1_PRUPE; Uncharacterized protein
STRING	XP_008222403.1	1e-149	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17860	5	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50915.2	6e-34	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]