PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008222427.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB_related
Protein Properties Length: 676aa    MW: 74305 Da    PI: 9.4878
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008222427.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.31.5e-07578627147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
   XP_008222427.1 578 RRPFSVAEVEALVQAVEKLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 627
                      6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542369.32E-8387478IPR029071Ubiquitin-related domain
PROSITE profilePS500538.59393463IPR000626Ubiquitin domain
PROSITE profilePS5129415.641573632IPR017930Myb domain
SMARTSM007172.0E-7577630IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-10578628IPR009057Homeodomain-like
SuperFamilySSF466891.2E-15579660IPR009057Homeodomain-like
CDDcd116602.72E-17579629No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYQVPATP RATRSARRRG AIRKRVDDNS MGAFDLLATI AGKLLLEGES  60
SPASSHTSKD QCAGTKENCL DGDKPLKVEP CDQGSCDRRI PVSDHISQGP NQSSCSKESP  120
VHQNESSVMT TSNCSERFAS DILVSGKCKN ETGSFTSKIE AGSSGCREAG EFKLDGEVKT  180
LIKDETNKSA KVLIGTGPGM CGLEDPVVWE GEPPALVSSD SSTKVPMYVD HIPQRSFPTS  240
RDDVKVVSRD DDENSSGCTH PVTSIKYSRP APSRIGDRRI RKILASKYWK VAPKLKDDIH  300
SNSYRDQKPN YHNRKNCYKR QRSQMNIPFK KRKLFDRNAV LNIDEGISRE GFFDSRGKGI  360
TGDASCSKMQ GAAMKSSSLA GQHSSFQSRS SHVKLRIKSF RVPELFIEIP DTATVGSLKK  420
TVMDAVTAVL GGGVCVGVLL QGKKVRDDNK TLQQTGISQD NQLDSLGFTL EPNPSQTPPP  480
LCSGDSPRML PCNVLQPLTR YPSGPTSEAS PEPHTASLGN FIESDHDSAP SPTDMSAEKS  540
TTDSKALVAV PDMSVEALAV VPGHRKSKRF DIGQRRIRRP FSVAEVEALV QAVEKLGTGR  600
WRDVKLRAFD NAKHRTYVDL KDKWKTLVHT ARISPQQRRG EPVPQELLDR VLTAHAYWSQ  660
QQAKQQLKQP ETCLLV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-565626681107Telomere binding protein TBP1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008222427.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222427.10.0PREDICTED: telomere repeat-binding protein 5 isoform X2
TrEMBLM5WSY30.0M5WSY3_PRUPE; Uncharacterized protein
STRINGEMJ099100.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.11e-115TRF-like 2