PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008222476.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 245aa MW: 28434.9 Da PI: 6.8794

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008222476.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.2	4.9e-27	72	163	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerr..traetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 +fY+ Y++++GF++r++++++s +++ i+ r+fvCskeg+r+e+ + +++r +r+ tr gC+a+l+++ ++ gkw+++ +++eHnHel+p XP_008222476.1 72 DFYEMYGRHMGFTIRNNRTRRSLKDNAIIGREFVCSKEGFRAEKYAT-SQNRVlpSRPATRKGCNAMLRITAKDGGKWVIYGFVKEHNHELNP 163 6*******************9****************9988.33333459********************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.4E-24	72	163	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MMASTSGQGF SPGRNYRCWL DETFSSHETA DDELSYTPDV DNNLIETSSQ DFSLTLEPVI 60 GMEFESAEDA RDFYEMYGRH MGFTIRNNRT RRSLKDNAII GREFVCSKEG FRAEKYATSQ 120 NRVLPSRPAT RKGCNAMLRI TAKDGGKWVI YGFVKEHNHE LNPNKIPPRR SHRIAFCEDE 180 KDLKIRELSM ELHREKKKSA AYQEKLQIVL KYIEEHTQRL SLKVELATNN MRELESEKQD 240 SSYSD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008222476.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222476.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_016647407.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	M5XZA2	0.0	M5XZA2_PRUPE; Uncharacterized protein
STRING	XP_008222476.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15811	9	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-47	FAR1 family protein