PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008222477.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

FAR1

Protein Properties

Length: 209aa MW: 24217.5 Da PI: 8.9277

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008222477.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.7	1.5e-26	44	132	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA++vGF +r+ + ++s+r+g+i r++ C+keg+ + + k r++ra+tr gCka+++vk +k++kw++tk+ ++HnH+l+ XP_008222477.1 44 FYDEYARRVGFVMRVMSCRRSERDGRILARRLGCNKEGHCVSIRGKFGPVRKPRASTREGCKAMIHVKYDKSSKWVITKFIKDHNHPLV 132 9************************************99999998**************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.0E-24	44	132	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MDSDEGARAV ESSSSQALVL YEADSILEPY EGMEFESEDA AKIFYDEYAR RVGFVMRVMS 60 CRRSERDGRI LARRLGCNKE GHCVSIRGKF GPVRKPRAST REGCKAMIHV KYDKSSKWVI 120 TKFIKDHNHP LVVSPREARQ TMDEKDKKIQ ELTAELRNKK RLCTTYQEQL TAFTKIVEEY 180 SDQLSKKVQN VVSNLKEFES IDRELSQHR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008222477.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222477.1	1e-155	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_016648093.1	1e-155	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like isoform X1
Refseq	XP_020409810.1	1e-155	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_020409811.1	1e-155	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_021833156.1	1e-155	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A251R2Y8	1e-154	A0A251R2Y8_PRUPE; Uncharacterized protein
STRING	XP_008222477.1	1e-155	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	1e-111	FAR1 family protein