PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008222595.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

bZIP

Protein Properties

Length: 430aa MW: 46822.9 Da PI: 6.5135

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008222595.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	32.1	2.4e-10	231	289	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l++e+ XP_008222595.1 231 KRAKRIWANRQSAARSKERKMRYIAELEQKVQTLQTEATSLSAQLTLLQRDTNGLTAEN 289 9*********************************************9998888777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.5E-16	227	291	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.932	229	292	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.4E-9	231	285	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.1E-10	231	285	No hit	No description
SuperFamily	SSF57959	5.44E-11	231	282	No hit	No description
CDD	cd14703	4.23E-25	232	281	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence Send to blast
MDKDKSPAHG GGLPPPSGRY SGFLPAGTPF NVKPEPASSS LFPPLASGAS ADSGHFGHGM 60 SAESSHFSHD ISRMPDNPPR KLGHRRAHSE ILTLPDDISF DSDLGVVGGA DGPSFSDETE 120 EDLFSMYLDM EKFNSSSATS SFQFGEPSSS AAAPVPALTP ASRAPTSSAE NIAIGSNERP 180 RVRHQHSQSM DGSTSIKPEM LVSSSEDISA ADSKKALSAA KLAELALIDP KRAKRIWANR 240 QSAARSKERK MRYIAELEQK VQTLQTEATS LSAQLTLLQR DTNGLTAENS ELKLRLQTME 300 QQVHLQDALN DALKEEIQHL KVLTGQAMPN GGPMMNFASF GSGQQFYTNN QAMHTLITAQ 360 QFQQLQIHSQ KQQHQFQQHQ LHQLQQQQMQ QQQQQQQQPQ SGDLKMGGSI PSPSQKDNAS 420 EVNQSVTKDC

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence Send to blast

MDKDKSPAHG GGLPPPSGRY SGFLPAGTPF NVKPEPASSS LFPPLASGAS ADSGHFGHGM  60
SAESSHFSHD ISRMPDNPPR KLGHRRAHSE ILTLPDDISF DSDLGVVGGA DGPSFSDETE  120
EDLFSMYLDM EKFNSSSATS SFQFGEPSSS AAAPVPALTP ASRAPTSSAE NIAIGSNERP  180
RVRHQHSQSM DGSTSIKPEM LVSSSEDISA ADSKKALSAA KLAELALIDP KRAKRIWANR  240
QSAARSKERK MRYIAELEQK VQTLQTEATS LSAQLTLLQR DTNGLTAENS ELKLRLQTME  300
QQVHLQDALN DALKEEIQHL KVLTGQAMPN GGPMMNFASF GSGQQFYTNN QAMHTLITAQ  360
QFQQLQIHSQ KQQHQFQQHQ LHQLQQQQMQ QQQQQQQQPQ SGDLKMGGSI PSPSQKDNAS  420
EVNQSVTKDC

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00126	DAP	Transfer from AT1G06070	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008222595.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222595.1	0.0	PREDICTED: probable transcription factor PosF21
Swissprot	Q04088	1e-159	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	M5XCD0	0.0	M5XCD0_PRUPE; Uncharacterized protein
STRING	XP_008222595.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5517	32	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	1e-146	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]