PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008222784.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 554aa    MW: 59257.7 Da    PI: 8.1176
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008222784.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.89.2e-09378425455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  XP_008222784.1 378 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 425
                     8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.32E-17372443IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.84E-11372429No hitNo description
Gene3DG3DSA:4.10.280.104.2E-17374442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.663374424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-6378425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-10380430IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MGKDRTATPS WNPSGFGMEM QSNELNCGSQ QLPNSLFNAN WDNSMDQSDP FESALSSIVS  60
SPAASNAAIA AGKGGGDGEM IRELIGRLGS ICNSGEISSH SYICGNNSTN TSCYSTPLNS  120
SPKLNLSMID PQMRGNLPIP GNHLPSHPSL APFQADPGFV ERAARFSCFG GGNFGGLNGQ  180
VNLNETELAY RSMPKIDSGK LSRASSNQSL KVAAGSQLGV QESNKSSPQG GNSAPDKKFG  240
RFSRSSTPEN AELGDSREGS SVSEQIPGGD TSVKAENVTN SRKRKPVARG KAKETSSSPS  300
VKDGKVVAEK EEPNSKRSKT DEASGNEKAA AKAKTEPSGG SKATGDGAQK QTKDNSEPPE  360
APKDYIHVRA RRGQATDSHS LAERVRREKI SERMKFLQDL VPGCNKVTGK AVMLDEIINY  420
VQSLQRQVEF LSMKLSTVNP RMDLNMEALL SKEILQSRGS LQNALYQLDS AIPSFPFGYQ  480
PQQLPPLHSS SISSGTETQF PESPLNAAMR QSQGMQLPTF DRFGGAAPQA PQFFEDDLQS  540
VVQMGFTSSN SQSR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008222784.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP6894010.0KP689401.1 Prunus pseudocerasus isolate Unigene19909 bHLH transcription factor mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008222784.10.0PREDICTED: transcription factor bHLH62
TrEMBLM5XAA50.0M5XAA5_PRUPE; Uncharacterized protein
STRINGXP_008222784.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.11e-71bHLH family protein