PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008222805.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

HSF

Protein Properties

Length: 483aa MW: 54085.1 Da PI: 5.7912

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008222805.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	111.1	7.8e-35	16	106	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl k+y++++d++++e++sws+n++sf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF+++ F +++k+ll++ XP_008222805.1 16 FLLKTYDMVDDSATDEIVSWSTNKKSFIVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFIQDQKHLLKN 101 9**************************************************************999.........************** PP XXXXX CS HSF_DNA-bind 97 ikrkk 101 i+r+k XP_008222805.1 102 IHRRK 106 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46785	9.11E-35	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	5.5E-37	12	105	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	1.7E-60	12	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.7E-19	16	39	IPR000232	Heat shock factor (HSF)-type, DNA-binding
Pfam	PF00447	2.7E-30	16	105	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.7E-19	54	66	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	55	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	7.7E-19	67	79	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 483 aa Download sequence Send to blast
MEGASTAGGG GGPAPFLLKT YDMVDDSATD EIVSWSTNKK SFIVWNPPEF ARLLLPTYFK 60 HNNFSSFIRQ LNTYGFRKID PERWEFANED FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD 120 PERAALDDEI EKLSHDKATL EANISRFKQQ RSDAKLQLED LTQRVNSMEQ RQKDLLKFLD 180 KNVQNPTFVE HLTRKIEAMD FSACNKKRRL PDVDHLQPVV ENSFVDNQSS SRSEFGNIFH 240 QDFSSKLRLE LSPAVSDINL VSRSTQSSNE DGYSPTRKIS EELKGVQKRT EGLLFAPETL 300 ELSDTGTSFA FKMDSLLSRK ALTVGNPRLH SLQPGLSSNE EGDGQISCQL KLTLASSPLQ 360 VNSSPHSATI PQVGQDISKS LASGLNAIGK ESDIRAFTNK NPADEDMHKT CSQEATNNNQ 420 GPPPAPVRVN DVFWEQFLTE RPGCSENEEA SSNYRGNPYD EQDDGRLGHG MSRSAKDAET 480 LTL

Sequence ? help Back to Top

Protein Sequence Length: 483 aa Download sequence Send to blast

MEGASTAGGG GGPAPFLLKT YDMVDDSATD EIVSWSTNKK SFIVWNPPEF ARLLLPTYFK  60
HNNFSSFIRQ LNTYGFRKID PERWEFANED FIQDQKHLLK NIHRRKPIHS HSNPQGSMVD  120
PERAALDDEI EKLSHDKATL EANISRFKQQ RSDAKLQLED LTQRVNSMEQ RQKDLLKFLD  180
KNVQNPTFVE HLTRKIEAMD FSACNKKRRL PDVDHLQPVV ENSFVDNQSS SRSEFGNIFH  240
QDFSSKLRLE LSPAVSDINL VSRSTQSSNE DGYSPTRKIS EELKGVQKRT EGLLFAPETL  300
ELSDTGTSFA FKMDSLLSRK ALTVGNPRLH SLQPGLSSNE EGDGQISCQL KLTLASSPLQ  360
VNSSPHSATI PQVGQDISKS LASGLNAIGK ESDIRAFTNK NPADEDMHKT CSQEATNNNQ  420
GPPPAPVRVN DVFWEQFLTE RPGCSENEEA SSNYRGNPYD EQDDGRLGHG MSRSAKDAET  480
LTL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	9e-21	3	105	17	129	Heat shock factor protein 1
5d5v_B	9e-21	3	105	17	129	Heat shock factor protein 1
5d5v_D	9e-21	3	105	17	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008222805.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KR132193	0.0	KR132193.1 Eriobotrya japonica heat shock factor 2 (HSF2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008222805.1	0.0	PREDICTED: heat stress transcription factor A-5
Swissprot	Q94BZ5	1e-168	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A251QYG7	0.0	A0A251QYG7_PRUPE; Uncharacterized protein
STRING	XP_008222805.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4961	32	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-170	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]