PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008223308.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

CAMTA

Protein Properties

Length: 898aa MW: 101632 Da PI: 7.2

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008223308.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.6	3.4e-51	26	142	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e k+rwl+++ei+aiL n++ +++ ++ + p+sg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+e+ ptf r XP_008223308.1 26 EEaKSRWLRPNEIHAILYNHKYFTIYVKPVNLPQSGTIVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVR 120 4559***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL+++le+ivlvhy+e++ XP_008223308.1 121 RCYWLLDKSLEHIVLVHYRETQ 142 *****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.289	21	147	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.4E-76	24	142	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-45	27	140	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.31E-13	352	439	IPR014756	Immunoglobulin E-set
CDD	cd00204	5.36E-14	512	646	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.7E-16	536	650	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.53E-17	549	649	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.7E-7	549	616	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.3	554	658	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.621	587	619	IPR002110	Ankyrin repeat
SMART	SM00248	9.2E-6	587	616	IPR002110	Ankyrin repeat
SMART	SM00248	1600	626	656	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.43E-5	726	801	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.73	735	761	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	26	750	772	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.053	751	780	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.022	773	795	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.164	774	798	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	8.0E-4	775	795	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	46	853	875	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.199	854	883	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MEKQLEGSEI HGFHTMQDLD VGTIMEEAKS RWLRPNEIHA ILYNHKYFTI YVKPVNLPQS 60 GTIVLFDRKM LRNFRKDGHN WKKKNDGKTV KEAHEHLKVG NEERIHVYYA HGEDSPTFVR 120 RCYWLLDKSL EHIVLVHYRE TQELQGSPVT PVNSNNSSSV SDPSAPWLLS EELDSGANKS 180 YCAGENELSE PGDGLTVKNH EKRLHDINTL EWEELLITND SKGDIVSCYD QQNQVVGNGF 240 ISGGASVISA EMSAFDNLTN PTSRSDNVQF NLLDSPYVPT VEKTTYDSLD VLVNDGLHSQ 300 DSFGRWINQV MADPPGSVED PALESSSLAA QNSFASPSAD HLQSSVPHQI FNITDLSPAW 360 AFSNEKTKIL ITGFFHQEYL HLAKSDLLCI CGDVCLRAEI VQAGVYRCFV PPHLPRVVNL 420 FMSIDGHKPI SLVLNFEYRA PVLSDPIISS EENKWEEFQA QMRLAYLLFS SSKNLNIVSN 480 KVLPNALKEA KKFSHRTSHI SNSWAYLMKA VEDNKTPLPL AKDGLFELIL KNRLKDWLLE 540 KVVASSTTKE YDAYGQGVIH LCAILEYTWA VRLFSWSGLS LDFRDRRGWT ALHWAAYCGR 600 EKMVAVLLSA GAKPNLVTDP SSENPGGCTA ADLAAMKGYD GLAAYLSEKA LVEQFKDMSM 660 AGNASGSLQT SSNYAGNSEN LSEDEIHLKD TLAAYRTAAD AAARIQAAFR ENSLKLKAKA 720 VQYSTPEAEA RGIIAALKIQ HAFRNYDTRK KIKAAARIQY RFRTWKMRQE FLSLRRQAIK 780 IQAAFRGFQV RRQYRKVLWS VGVLEKAVLR WRFKRRGLRG LNVAPVEVDV DQKQESDTEE 840 DFYRASRKQA EERIERSVVR VQAMFRSKKA QEEYSRMKLT HIEAKLEFEE LLNPDLDS

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MEKQLEGSEI HGFHTMQDLD VGTIMEEAKS RWLRPNEIHA ILYNHKYFTI YVKPVNLPQS  60
GTIVLFDRKM LRNFRKDGHN WKKKNDGKTV KEAHEHLKVG NEERIHVYYA HGEDSPTFVR  120
RCYWLLDKSL EHIVLVHYRE TQELQGSPVT PVNSNNSSSV SDPSAPWLLS EELDSGANKS  180
YCAGENELSE PGDGLTVKNH EKRLHDINTL EWEELLITND SKGDIVSCYD QQNQVVGNGF  240
ISGGASVISA EMSAFDNLTN PTSRSDNVQF NLLDSPYVPT VEKTTYDSLD VLVNDGLHSQ  300
DSFGRWINQV MADPPGSVED PALESSSLAA QNSFASPSAD HLQSSVPHQI FNITDLSPAW  360
AFSNEKTKIL ITGFFHQEYL HLAKSDLLCI CGDVCLRAEI VQAGVYRCFV PPHLPRVVNL  420
FMSIDGHKPI SLVLNFEYRA PVLSDPIISS EENKWEEFQA QMRLAYLLFS SSKNLNIVSN  480
KVLPNALKEA KKFSHRTSHI SNSWAYLMKA VEDNKTPLPL AKDGLFELIL KNRLKDWLLE  540
KVVASSTTKE YDAYGQGVIH LCAILEYTWA VRLFSWSGLS LDFRDRRGWT ALHWAAYCGR  600
EKMVAVLLSA GAKPNLVTDP SSENPGGCTA ADLAAMKGYD GLAAYLSEKA LVEQFKDMSM  660
AGNASGSLQT SSNYAGNSEN LSEDEIHLKD TLAAYRTAAD AAARIQAAFR ENSLKLKAKA  720
VQYSTPEAEA RGIIAALKIQ HAFRNYDTRK KIKAAARIQY RFRTWKMRQE FLSLRRQAIK  780
IQAAFRGFQV RRQYRKVLWS VGVLEKAVLR WRFKRRGLRG LNVAPVEVDV DQKQESDTEE  840
DFYRASRKQA EERIERSVVR VQAMFRSKKA QEEYSRMKLT HIEAKLEFEE LLNPDLDS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008223308.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208139	1e-38	AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008223308.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X1
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A251QWG4	0.0	A0A251QWG4_PRUPE; Uncharacterized protein
STRING	XP_008223308.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4288	34	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]