PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008223309.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

CAMTA

Protein Properties

Length: 896aa MW: 101391 Da PI: 7.2

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008223309.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.6	3.4e-51	26	142	3	118
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqr 96 +e k+rwl+++ei+aiL n++ +++ ++ + p+sg+++L++rk++r+frkDG++wkkk dgktv+E+he+LKvg+ e +++yYah+e+ ptf r XP_008223309.1 26 EEaKSRWLRPNEIHAILYNHKYFTIYVKPVNLPQSGTIVLFDRKMLRNFRKDGHNWKKKNDGKTVKEAHEHLKVGNEERIHVYYAHGEDSPTFVR 120 4559***************************************************************************************** PP CG-1 97 rcywlLeeelekivlvhylevk 118 rcywlL+++le+ivlvhy+e++ XP_008223309.1 121 RCYWLLDKSLEHIVLVHYRETQ 142 *****************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	76.492	21	147	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	3.4E-76	24	142	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.5E-45	27	140	IPR005559	CG-1 DNA-binding domain
SuperFamily	SSF81296	1.31E-13	350	437	IPR014756	Immunoglobulin E-set
CDD	cd00204	5.14E-14	510	644	No hit	No description
Gene3D	G3DSA:1.25.40.20	1.7E-16	534	648	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	5.7E-7	547	614	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	6.53E-17	547	647	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	15.3	552	656	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50088	11.621	585	617	IPR002110	Ankyrin repeat
SMART	SM00248	9.2E-6	585	614	IPR002110	Ankyrin repeat
SMART	SM00248	1600	624	654	IPR002110	Ankyrin repeat
SuperFamily	SSF52540	1.58E-5	724	799	IPR027417	P-loop containing nucleoside triphosphate hydrolase
PROSITE profile	PS50096	7.73	733	759	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	26	748	770	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.053	749	778	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.022	771	793	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	10.164	772	796	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	8.0E-4	773	793	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	46	851	873	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.199	852	881	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 896 aa Download sequence Send to blast
MEKQLEGSEI HGFHTMQDLD VGTIMEEAKS RWLRPNEIHA ILYNHKYFTI YVKPVNLPQS 60 GTIVLFDRKM LRNFRKDGHN WKKKNDGKTV KEAHEHLKVG NEERIHVYYA HGEDSPTFVR 120 RCYWLLDKSL EHIVLVHYRE TQEGSPVTPV NSNNSSSVSD PSAPWLLSEE LDSGANKSYC 180 AGENELSEPG DGLTVKNHEK RLHDINTLEW EELLITNDSK GDIVSCYDQQ NQVVGNGFIS 240 GGASVISAEM SAFDNLTNPT SRSDNVQFNL LDSPYVPTVE KTTYDSLDVL VNDGLHSQDS 300 FGRWINQVMA DPPGSVEDPA LESSSLAAQN SFASPSADHL QSSVPHQIFN ITDLSPAWAF 360 SNEKTKILIT GFFHQEYLHL AKSDLLCICG DVCLRAEIVQ AGVYRCFVPP HLPRVVNLFM 420 SIDGHKPISL VLNFEYRAPV LSDPIISSEE NKWEEFQAQM RLAYLLFSSS KNLNIVSNKV 480 LPNALKEAKK FSHRTSHISN SWAYLMKAVE DNKTPLPLAK DGLFELILKN RLKDWLLEKV 540 VASSTTKEYD AYGQGVIHLC AILEYTWAVR LFSWSGLSLD FRDRRGWTAL HWAAYCGREK 600 MVAVLLSAGA KPNLVTDPSS ENPGGCTAAD LAAMKGYDGL AAYLSEKALV EQFKDMSMAG 660 NASGSLQTSS NYAGNSENLS EDEIHLKDTL AAYRTAADAA ARIQAAFREN SLKLKAKAVQ 720 YSTPEAEARG IIAALKIQHA FRNYDTRKKI KAAARIQYRF RTWKMRQEFL SLRRQAIKIQ 780 AAFRGFQVRR QYRKVLWSVG VLEKAVLRWR FKRRGLRGLN VAPVEVDVDQ KQESDTEEDF 840 YRASRKQAEE RIERSVVRVQ AMFRSKKAQE EYSRMKLTHI EAKLEFEELL NPDLDS

Sequence ? help Back to Top

Protein Sequence Length: 896 aa Download sequence Send to blast

MEKQLEGSEI HGFHTMQDLD VGTIMEEAKS RWLRPNEIHA ILYNHKYFTI YVKPVNLPQS  60
GTIVLFDRKM LRNFRKDGHN WKKKNDGKTV KEAHEHLKVG NEERIHVYYA HGEDSPTFVR  120
RCYWLLDKSL EHIVLVHYRE TQEGSPVTPV NSNNSSSVSD PSAPWLLSEE LDSGANKSYC  180
AGENELSEPG DGLTVKNHEK RLHDINTLEW EELLITNDSK GDIVSCYDQQ NQVVGNGFIS  240
GGASVISAEM SAFDNLTNPT SRSDNVQFNL LDSPYVPTVE KTTYDSLDVL VNDGLHSQDS  300
FGRWINQVMA DPPGSVEDPA LESSSLAAQN SFASPSADHL QSSVPHQIFN ITDLSPAWAF  360
SNEKTKILIT GFFHQEYLHL AKSDLLCICG DVCLRAEIVQ AGVYRCFVPP HLPRVVNLFM  420
SIDGHKPISL VLNFEYRAPV LSDPIISSEE NKWEEFQAQM RLAYLLFSSS KNLNIVSNKV  480
LPNALKEAKK FSHRTSHISN SWAYLMKAVE DNKTPLPLAK DGLFELILKN RLKDWLLEKV  540
VASSTTKEYD AYGQGVIHLC AILEYTWAVR LFSWSGLSLD FRDRRGWTAL HWAAYCGREK  600
MVAVLLSAGA KPNLVTDPSS ENPGGCTAAD LAAMKGYDGL AAYLSEKALV EQFKDMSMAG  660
NASGSLQTSS NYAGNSENLS EDEIHLKDTL AAYRTAADAA ARIQAAFREN SLKLKAKAVQ  720
YSTPEAEARG IIAALKIQHA FRNYDTRKKI KAAARIQYRF RTWKMRQEFL SLRRQAIKIQ  780
AAFRGFQVRR QYRKVLWSVG VLEKAVLRWR FKRRGLRGLN VAPVEVDVDQ KQESDTEEDF  840
YRASRKQAEE RIERSVVRVQ AMFRSKKAQE EYSRMKLTHI EAKLEFEELL NPDLDS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008223309.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC208139	1e-38	AC208139.1 Populus trichocarpa clone JGIACSB13-D20, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008223309.1	0.0	PREDICTED: calmodulin-binding transcription activator 5-like isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A251QWG2	0.0	A0A251QWG2_PRUPE; Uncharacterized protein
STRING	XP_008223308.1	0.0	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]