PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223335.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 377aa    MW: 41858.5 Da    PI: 5.352
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223335.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46.1e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrWT+eEde+l ++++++G g+W++ +   g+ R++k+c++rw +yl
   XP_008223335.1 14 RGRWTAEEDEILTNYIQLHGEGSWRSLPINAGLLRCGKSCRLRWTNYL 61
                     8*******************************99************97 PP
2Myb_DNA-binding55.11.8e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE+e +v++++ lG++ W+ Ia++++ gRt++++k++w+++l
   XP_008223335.1  67 RGNITAEEEETIVKLHTALGNR-WSFIAAHLP-GRTDNEIKNYWNSHL 112
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-21564IPR009057Homeodomain-like
PROSITE profilePS5129415.157961IPR017930Myb domain
SuperFamilySSF466892.27E-2811108IPR009057Homeodomain-like
SMARTSM007172.9E-121363IPR001005SANT/Myb domain
PfamPF002491.3E-141461IPR001005SANT/Myb domain
CDDcd001675.79E-91661No hitNo description
PROSITE profilePS5129425.41762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.5E-2565116IPR009057Homeodomain-like
SMARTSM007179.7E-1666114IPR001005SANT/Myb domain
PfamPF002491.7E-1467112IPR001005SANT/Myb domain
CDDcd001674.32E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051555Biological Processflavonol biosynthetic process
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGRAPCCEKL GLKRGRWTAE EDEILTNYIQ LHGEGSWRSL PINAGLLRCG KSCRLRWTNY  60
LRADLKRGNI TAEEEETIVK LHTALGNRWS FIAAHLPGRT DNEIKNYWNS HLSRKIYTFT  120
NLGNDYLPTI TNVGKKTAAS FKDRRAAARA NRSSIMNKNK NVLSPSPQRS QAKPQQSGTN  180
IADHVVLQLE PSARENQKGD EAIRMWGLKG SCLDSTERIN LDHCGDQKKG AELCLGNKVN  240
ITSSTVLSGD NNGEKEVLGP CECVESEIMG LESGVVDPSG NVGFKEQRED GIIMEGNITD  300
EVTKSEGRES TSLWSSNAES GGVDWNSFSS SLNSAFDDEW LSWGWAGGFE CHNELAFWDE  360
EERIAWLWES GSTGEGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-221211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00598PBMTransfer from AT5G49330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223335.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8285531e-120FR828553.1 Rosa hybrid cultivar mRNA for putative MYB transcription factor (myb2 gene), cultivar Yellow Island.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223335.10.0PREDICTED: transcription factor MYB12
TrEMBLA0A251QWC00.0A0A251QWC0_PRUPE; Uncharacterized protein
STRINGXP_008223335.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49330.13e-74myb domain protein 111