PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223824.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HD-ZIP
Protein Properties Length: 186aa    MW: 21587.5 Da    PI: 10.3852
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223824.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-183690256
                    T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
        Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                    rk+ ++tkeq + Lee F ++++++ ++++ LA++l+L++rqV vWFqNrRa+ k
  XP_008223824.1 36 RKKLRLTKEQSTLLEESFTRHSTLNPARKQSLAEQLNLKQRQVEVWFQNRRARTK 90
                    678899***********************************************98 PP
2HD-ZIP_I/II113.31.5e-3636124189
     HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 
                     +kk+rl+keq++lLEesF+++++L+p rK++la++L+l++rqv+vWFqnrRARtk+kq+E+d+e+ k+++++l +en+rL+ke +eLr+
  XP_008223824.1  36 RKKLRLTKEQSTLLEESFTRHSTLNPARKQSLAEQLNLKQRQVEVWFQNRRARTKLKQTEVDCEFWKKRCESLGDENRRLKKELQELRS 124
                     69*************************************************************************************94 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-171490IPR009057Homeodomain-like
SuperFamilySSF466891.21E-182393IPR009057Homeodomain-like
PROSITE profilePS5007117.5083292IPR001356Homeobox domain
SMARTSM003894.8E-153496IPR001356Homeobox domain
CDDcd000867.76E-143693No hitNo description
PfamPF000467.3E-163690IPR001356Homeobox domain
PROSITE patternPS0002706790IPR017970Homeobox, conserved site
PfamPF021835.2E-892123IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.1E-1592137IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MENRSSLRAM DEDEESERSI GTNNKSIIMN NKNGVRKKLR LTKEQSTLLE ESFTRHSTLN  60
PARKQSLAEQ LNLKQRQVEV WFQNRRARTK LKQTEVDCEF WKKRCESLGD ENRRLKKELQ  120
ELRSFNKNGA SPLYIQIPKA TILSMCPSCE RMVKAHHHDQ AAAKNTEDLN VVRKSNKLQG  180
GFDGTN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18492RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223824.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223824.11e-136PREDICTED: homeobox-leucine zipper protein HAT14-like
SwissprotP466651e-51HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A251QUI11e-126A0A251QUI1_PRUPE; Uncharacterized protein
STRINGXP_008223824.11e-136(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.15e-54homeobox from Arabidopsis thaliana