PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008223870.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 242aa    MW: 27470.3 Da    PI: 5.2915
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008223870.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.91.9e-135496754
                    HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH  7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                      Er+RR+++N++++ Lr ++Pk +      K++Ka+i + A++YI++L
  XP_008223870.1 54 VSERNRRKKLNERLFALRAVVPKiS------KMDKASIIKDAIDYIQEL 96
                    57*********************66......****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.14E-1747111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.2794796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.96E-1350101No hitNo description
Gene3DG3DSA:4.10.280.101.1E-1653112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-1453102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-115496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MDNIGDEYKH YWETNMFLQT EELDSWGLDE AFSGYYDSSS PDGGASSMAS KNIVSERNRR  60
KKLNERLFAL RAVVPKISKM DKASIIKDAI DYIQELHEQE RRIQTEIGEL ESGRSKKNLG  120
SEFDQELPVL LRSKKKKIEQ LYDSGGSRTS TIEVLELRVT YMGEKTVVAS LTCSKRTDTM  180
VKLCEVFESL KLKIITANIT AFSGRVLKTV FIEADEEEKD HLKIKIETAI AALNDPQSPM  240
SI
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008223870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008223870.11e-179PREDICTED: transcription factor bHLH35
SwissprotQ2HIV99e-99BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A251QTX51e-177A0A251QTX5_PRUPE; Uncharacterized protein
STRINGXP_008223870.11e-178(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.12e-88bHLH family protein