PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008223917.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

TCP

Protein Properties

Length: 240aa MW: 25131 Da PI: 10.5419

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008223917.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	125.1	7.7e-39	37	179	2	89
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg........ 88 a+kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s ++++ss+ XP_008223917.1 37 AVKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSLRGGAPSSSapssttts 130 78**************************************************************99999766.4444444443333333444555 PP TCP 89 ................................................k 89 + XP_008223917.1 131 dhkphllggptpsmpsvlgptagvpgafwaphfgqvwsfaatpppemmA 179 5566777777777777777777777777777777777777777765542 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	43	97	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	3.0E-34	43	180	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MSNSEAPNNE LTNGGGGGGG MVEQQASQRP SSNGVLAVKK PPSKDRHSKV DGRGRRIRMP 60 IICAARVFQL TRELGHKSDG QTIEWLLRQA EPSIIAATGT GTTPASFSTV SVSLRGGAPS 120 SSAPSSTTTS DHKPHLLGGP TPSMPSVLGP TAGVPGAFWA PHFGQVWSFA ATPPPEMMAQ 180 SAVSHQQHQQ QQQHSLFLQQ QPMGEASAAR VGNYLPGHLN LLASLSGGHG NSGRREDDPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008223917.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK240798	1e-72	AK240798.1 Oryza sativa Japonica Group cDNA, clone: J065002G04, full insert sequence.
GenBank	AP004776	1e-72	AP004776.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, PAC clone:P0452F04.
GenBank	AP014958	1e-72	AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBank	CP012610	1e-72	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008223917.1	1e-174	PREDICTED: transcription factor TCP7-like
Swissprot	Q9FMX2	2e-78	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A314XYL4	1e-128	A0A314XYL4_PRUYE; Transcription factor TCP7-like
STRING	XP_008223917.1	1e-173	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5469	31	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	4e-64	TCP family protein