PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224020.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 256aa    MW: 29944.7 Da    PI: 9.325
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224020.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.86.1e-192370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++vk++G g+W+++ar  g++R +k+c++rw +yl
   XP_008224020.1 23 KGPWTAEEDGLLIEYVKLHGEGRWNSVARLAGLKRNGKSCRLRWVNYL 70
                     79********************************************97 PP
2Myb_DNA-binding51.91.8e-1676120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ +++++++++G++ W+tIar ++ gRt++++k++w+++
   XP_008224020.1  76 RGQITPHEESIILELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.8531874IPR017930Myb domain
SuperFamilySSF466891.76E-3020117IPR009057Homeodomain-like
SMARTSM007171.6E-152272IPR001005SANT/Myb domain
PfamPF002493.8E-172370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-232477IPR009057Homeodomain-like
CDDcd001678.83E-112570No hitNo description
SMARTSM007171.4E-1475123IPR001005SANT/Myb domain
PROSITE profilePS5129419.3575125IPR017930Myb domain
PfamPF002491.0E-1376120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-2478124IPR009057Homeodomain-like
CDDcd001671.21E-980121No hitNo description
Gene3DG3DSA:1.10.238.102.7E-4133181IPR011992EF-hand domain pair
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MYLGMMAGHH MGWGIIEEEG WRKGPWTAEE DGLLIEYVKL HGEGRWNSVA RLAGLKRNGK  60
SCRLRWVNYL RPELKRGQIT PHEESIILEL HARWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKAKVPSD ASEKAKNRFL RRKQFHNQQH QQQQQQQHLQ VNQEEVKRIM ALLDENNDTK  180
IPCFWPQVKQ GMETISIYPH HTTDHQEQGF YYSMLNGNVS VPEASNNEEN FLWDGLWNLN  240
DVHGNFSSTC ATGKAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C4e-272312527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224020.10.0PREDICTED: transcription factor MYB24-like
TrEMBLM5XC731e-167M5XC73_PRUPE; Uncharacterized protein
STRINGXP_008224020.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-87myb domain protein 305