PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224023.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family MYB
Protein Properties Length: 274aa    MW: 31921.7 Da    PI: 9.3072
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224023.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-182370148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd ll+++v+++G g+W+++ar  g++R +k+c++rw +yl
   XP_008224023.1 23 KGPWTAEEDRLLIEYVRLHGEGRWNSVARLGGLKRNGKSCRLRWVNYL 70
                     79********************************************97 PP
2Myb_DNA-binding51.52.3e-1676120147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg  T+ E+ ++v++++++G++ W+tIar ++ gRt++++k++w+++
   XP_008224023.1  76 RGQITPNEESIIVELHARWGNR-WSTIARSLP-GRTDNEIKNYWRTH 120
                      7888******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8561870IPR017930Myb domain
SuperFamilySSF466899.77E-3020117IPR009057Homeodomain-like
SMARTSM007171.2E-152272IPR001005SANT/Myb domain
PfamPF002491.0E-162370IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.4E-232477IPR009057Homeodomain-like
CDDcd001671.07E-112570No hitNo description
PROSITE profilePS5129424.21371125IPR017930Myb domain
SMARTSM007171.7E-1375123IPR001005SANT/Myb domain
PfamPF002498.3E-1476120IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.3E-2478124IPR009057Homeodomain-like
CDDcd001673.46E-980121No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MYFGVMAGHQ MGWGIIEEEG WRKGPWTAEE DRLLIEYVRL HGEGRWNSVA RLGGLKRNGK  60
SCRLRWVNYL RPDLKRGQIT PNEESIIVEL HARWGNRWST IARSLPGRTD NEIKNYWRTH  120
FKKKAKVPSE ASEKAKTRLL RRQQFHHQQQ QQQQQQQQQQ QQQQQQQQLQ LINQAEVKRI  180
MALLDENDNN KISSWPQVKQ DMDASSAAYP HHTADHQEQG FFYSMLNGNV YVPEASSSED  240
SFLWDGLWNL DDVHGNFGTA AGKASFHNLV VPFC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C8e-272312527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224023.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224023.10.0PREDICTED: myb-related protein 315-like
TrEMBLM5XSD51e-175M5XSD5_PRUPE; Uncharacterized protein
STRINGXP_008224023.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF118234108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24310.11e-91myb domain protein 305