PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008224336.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

C2H2

Protein Properties

Length: 199aa MW: 21958.6 Da PI: 6.4087

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008224336.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.5e-05	26	46	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C +C+++F + L +Hi +H XP_008224336.1 26 CRICDRVFMSTQALINHIESH 46 ******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.974	24	51	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	26	46	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 199 aa Download sequence Send to blast
MRHGGNVHGS NCGPASMPSG STEIACRICD RVFMSTQALI NHIESHIVDD GLTASRLRQL 60 TQQTNTNPPI RSNPVFPLSN PFNQRNPFHD VHNNQIGFAP PPPHHQYPYP QQQLSPYALP 120 RNVNVNVNQG VVGSHYMVMQ SANETAARMA SEEDNLSSDC TMPLLSQLER PLPPVNYELD 180 RLGNIGEASS DNLDLTLKL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008224336.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008224336.1	1e-146	PREDICTED: uncharacterized protein LOC103324080
TrEMBL	A0A314ZFQ4	1e-117	A0A314ZFQ4_PRUYE; Uncharacterized protein
STRING	XP_008224336.1	1e-145	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14890	8	12