PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008224631.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family Trihelix
Protein Properties Length: 377aa    MW: 42899.4 Da    PI: 6.8511
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008224631.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix86.53.3e-27255340186
        trihelix   1 rWtkqevlaLiearremeerlr.rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++ ev+ Li++r  +e+++r +g++k+p Wee+s  m + g++rs+ +Ckekwen+nk++k+   ++kkr s + +tcpyf++le
  XP_008224631.1 255 RWPEAEVQSLITLRAGLEHKFRiAGNSKGPIWEEISLGMYDMGYNRSARKCKEKWENINKYFKRSMGTDKKR-SANAKTCPYFHELE 340
                     8*********************559**********************************************8.67778*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.69248313IPR017877Myb-like domain
CDDcd122031.38E-23254319No hitNo description
PfamPF138373.3E-19254340No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEALTADRHI PNTAAFPEQI APFPESTDQH LLFANPTAVV HSPPQKLRPI RCSSGRCPAI  60
ELPDSAGNLG DGGPAHVGSG TWGDEGENES SSSPDDDGDE YLKTEGTERM KRKRKRRSRT  120
GGRLERVEIF LESLVMKVME KQEQMHKQLI EMIEKREKER IAREEAWKQQ ELDRMKRDEE  180
IRAQETSRSL TLISFIQNFL GHEIQVPKPP PPPPPPPISV VPNYDHRCMD ENGGADNGIQ  240
RDMMVMIKCD QTNRRWPEAE VQSLITLRAG LEHKFRIAGN SKGPIWEEIS LGMYDMGYNR  300
SARKCKEKWE NINKYFKRSM GTDKKRSANA KTCPYFHELE LLHKSGLVSS EDGFKCTSNQ  360
NEAKIEKQDN SEKGVTE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116KRKRKRR
2111116RKRKRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008224631.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008224631.10.0PREDICTED: trihelix transcription factor GTL1
TrEMBLM5WLA50.0M5WLA5_PRUPE; Uncharacterized protein
STRINGXP_008224631.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.14e-40Trihelix family protein