PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008224747.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

G2-like

Protein Properties

Length: 240aa MW: 26712.2 Da PI: 8.2555

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008224747.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.8	3.1e-30	65	115	2	52
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 prlrWtp+LH++Fv+ave+LGG+++AtPk +l++m+vkgLt++hvkSHLQ XP_008224747.1 65 PRLRWTPDLHHCFVHAVERLGGEQRATPKMVLQIMNVKGLTISHVKSHLQE 115 8*************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.798	61	121	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-29	61	117	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.13E-13	63	119	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	8.4E-22	65	115	IPR006447	Myb domain, plants
Pfam	PF00249	3.6E-7	66	115	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MKSSLKGSPS SCVDNGDDDD HQAGQRLVLY HHLLAAADHH QRSGLQKSPS SSSTPVRPYV 60 RSKMPRLRWT PDLHHCFVHA VERLGGEQRA TPKMVLQIMN VKGLTISHVK SHLQEAKETL 120 KDETKQAMWI EKKVTREQNP NSFIIFKDLL KRCTDAQESN DQGKAVSLVS AGCKSNHKEF 180 EDVLLCEESE SSMRVVSNND ARMSLSLNSS PKASHELLRL SKAAGNSDMN DVSLELTLST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-17	66	117	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-17	66	117	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-17	66	117	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-17	66	117	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-17	66	117	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-17	66	117	3	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-17	66	117	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-17	66	117	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-17	66	117	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-17	66	117	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-17	66	117	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-17	66	117	4	55	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008224747.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008224747.1	1e-179	PREDICTED: probable transcription factor KAN4
TrEMBL	A0A251PEB6	1e-73	A0A251PEB6_PRUPE; Uncharacterized protein
STRING	XP_008224747.1	1e-178	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-31	G2-like family protein