PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008225024.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

MYB

Protein Properties

Length: 207aa MW: 23623.4 Da PI: 6.8056

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008225024.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.8	6.8e-15	8	51	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT Ed l++av+++G+++W+++ar +g +Rt+ +c++rw + XP_008225024.1 8 PWTVGEDRDLIEAVERYGTHRWEAVARFLG-TRTGRECQNRWVAW 51 8***************************.*********765 PP
2	Myb_DNA-binding	26.2	1.8e-08	59	99	2	43
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksr 43 + W++ Ed +l ++ ++l+ W tIa +++ Rt+ +c++r XP_008225024.1 59 DEWSQVEDAKLRQLSTLLPAQ-WQTIADMFNGSRTATSCQLR 99 68***************99.***************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.439	1	56	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.1E-18	3	55	IPR009057	Homeodomain-like
SMART	SM00717	2.8E-14	5	54	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.91E-20	6	97	IPR009057	Homeodomain-like
Pfam	PF00249	3.6E-14	8	51	IPR001005	SANT/Myb domain
CDD	cd00167	1.77E-12	8	52	No hit	No description
PROSITE profile	PS50090	7.399	53	104	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	5.5E-10	56	99	IPR009057	Homeodomain-like
SMART	SM00717	6.9E-5	57	106	IPR001005	SANT/Myb domain
Pfam	PF00249	2.0E-6	59	99	IPR001005	SANT/Myb domain
Pfam	PF12815	1.7E-10	149	203	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MKKISARPWT VGEDRDLIEA VERYGTHRWE AVARFLGTRT GRECQNRWVA WLHPQIRTDE 60 WSQVEDAKLR QLSTLLPAQW QTIADMFNGS RTATSCQLRH SFLLENPQKI SNQEGSSTLT 120 KKPGPPRRIS SQEGSSSFTQ KTGPPQEEDK TPAVKEEEKT PALKEKEKTP ALKEEEKTPA 180 LKEEEKTPAL KEEEKTPALK EEENSQS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lj3_O	2e-19	9	105	13	107	CEF1
6exn_O	3e-19	9	105	13	107	Pre-mRNA-splicing factor CEF1

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008225024.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008225024.1	1e-149	PREDICTED: pre-mRNA-splicing factor cef1-like
TrEMBL	A0A314Y868	4e-60	A0A314Y868_PRUYE; Pre-mRNA-splicing factor cef1-like
STRING	XP_008225024.1	1e-148	(Prunus mume)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	1e-18	cell division cycle 5