PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225084.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 194aa    MW: 22121.3 Da    PI: 9.4262
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225084.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.64e-33191162102
                     HHHHHHHHHC......TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS
    HSF_DNA-bind   2 Flkklyeile......deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 
                     Fl+k+y++le       ++ k+++sw+++g+ f+v+ + ef++ +LpkyFkh+nf+SF+RQLn+YgFkk++ ++         weFkh++F+kg 
  XP_008225084.1  19 FLSKTYDLLEkgaaeeGDSGKKIVSWNAEGSGFIVWSPAEFSELLLPKYFKHNNFSSFIRQLNTYGFKKTSPKQ---------WEFKHEKFQKGC 104
                     9*********66655545899*************************************************9988.........************ PP

                     XXXXXXXXXXXX CS
    HSF_DNA-bind  91 kellekikrkks 102
                     +++l +i rkk 
  XP_008225084.1 105 RHMLVEITRKKC 116
                     *********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.9E-3510109IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.36E-2615114IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.6E-4215114IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-2919114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-112548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-116375IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-117688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAATTSSGQS PRTRSPAPFL SKTYDLLEKG AAEEGDSGKK IVSWNAEGSG FIVWSPAEFS  60
ELLLPKYFKH NNFSSFIRQL NTYGFKKTSP KQWEFKHEKF QKGCRHMLVE ITRKKCEPSA  120
FPVYLKASEE SGSSSTTVAA AEENNRLLLM EENKNLRKQK LELQMQLSQF KALEMKLLDC  180
LAQNMEDHQN KVRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5w_B7e-16171142104Putative transcription factor
5d5x_B7e-16171142104Putative transcription factor
5d5x_E7e-16171142104Putative transcription factor
5d8k_B9e-16161143105Heat shock factor protein 2
5d8l_B9e-16161143105Heat shock factor protein 2
5d8l_D9e-16161143105Heat shock factor protein 2
5d8l_F9e-16161143105Heat shock factor protein 2
5d8l_H9e-16161143105Heat shock factor protein 2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225084.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225084.11e-143PREDICTED: heat stress transcription factor B-2a-like
TrEMBLA0A314ZQ471e-137A0A314ZQ47_PRUYE; Heat stress transcription factor B-2a
STRINGXP_008225084.11e-143(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.15e-39heat shock factor 4