PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008225091.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LSD

Protein Properties

Length: 144aa MW: 15600.8 Da PI: 7.222

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008225091.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	37	5.7e-12	55	79	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL Y rGA++V+C++C+tV XP_008225091.1 55 CGSCRRLLKYSRGARHVQCSCCQTV 79 ************************9 PP
2	zf-LSD1	40.7	3.8e-13	93	117	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C +lL+Y +GA+sVRC++C++V XP_008225091.1 93 CGSCAVLLMYQYGASSVRCSSCQFV 117 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.8E-16	52	82	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.2E-10	55	79	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	7.5E-12	90	118	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	6.8E-11	93	117	IPR005735	Zinc finger, LSD1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009617	Biological Process	response to bacterium

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
MSSCCLQPPP CVREAETEGR MESTVEVDKG PVPEHQSIAA AQPPPSPSEI AQMVCGSCRR 60 LLKYSRGARH VQCSCCQTVN FVLEADQVGQ VKCGSCAVLL MYQYGASSVR CSSCQFVTEI 120 GEHNKRPPWS VQQGQPLPPA NPVH

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008225091.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008225091.1	1e-101	PREDICTED: protein LOL2
Swissprot	O65426	4e-42	LOL2_ARATH; Protein LOL2
TrEMBL	M5WI02	2e-83	M5WI02_PRUPE; Uncharacterized protein
STRING	XP_008225091.1	1e-101	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13026	31	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G21610.1	3e-41	lsd one like 2