PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008225120.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 292aa MW: 31682.5 Da PI: 8.3497

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008225120.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	120.3	6.9e-38	25	84	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++ +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+ XP_008225120.1 25 NQQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRP 84 67899***************************************************9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	8.1E-33	27	83	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	29	83	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	4.0E-24	30	83	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	31	67	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MDQQNPDQRL KPTLQTENQQ QQQQNQQPQK CPRCESLNTK FCYYNNYSLS QPRYFCKTCR 60 RYWTQGGTLR NVPVGGGCRK GKRPKTNSSS SSSPSLQPQA QAQAPQQDQQ TVKNLATTSP 120 SSNLEAIEST SNLASHHQYY PGVTGYLSSY AAIQSLNQSQ PFNVEGHDQL GGGASSNMSL 180 LQGFNVSAPF GQFYQAGNTK SGMVDQTALF PSDQEGLLIQ PTRPSAASDH DWPHQSFNIN 240 RSSANASSAA SESALWATTT SGNMNTSTTT SAGPSLNPSQ WPDLPGSYGP PN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008225120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM423336	9e-34	AM423336.2 Vitis vinifera contig VV78X037628.5, whole genome shotgun sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008225120.1	0.0	PREDICTED: dof zinc finger protein DOF5.3-like
TrEMBL	M5X438	1e-164	M5X438_PRUPE; Uncharacterized protein
STRING	XP_008225119.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4145	32	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	3e-32	OBF binding protein 4