PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008225121.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Dof

Protein Properties

Length: 376aa MW: 40929.8 Da PI: 8.026

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008225121.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.6	1.5e-39	66	126	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCds+ntkfCyynnyslsqPr+fCkaC+ryWt+GG+lrnvPvGgg+rknk+++ XP_008225121.1 66 QQQALKCPRCDSSNTKFCYYNNYSLSQPRHFCKACKRYWTRGGTLRNVPVGGGCRKNKRVK 126 57899*****************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.1E-33	68	124	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.525	70	124	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	2.0E-26	71	124	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	72	108	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence Send to blast
MLSNCDHEKM VLISSTTNEW PQMQQQDNIQ IDDHHQKGLN NNMSSSTSSP ATRIMEKPGQ 60 EQLQLQQQAL KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR 120 KNKRVKRPGS SSSSAMDGAS SSSSSVPSNT ANNNNSNSNP PSQPSQIDQI NPLFYGVPSN 180 PFMDSPSSAS GFDLHQLNHH HAQLGLGFSS AGTFMSGDNY RNRFNPTSNS SLPSSNYSSI 240 FSTSPSTTTT TPTMASVLAS KFLNGGSFKD IQARGPSHNQ YFQSLLPFED LHIAAGNTGE 300 AGGAAKDVKI EDQAGQNRLE WNNNSNNNNV NGNMNCQNQM TEQMGLSDPS LYWSSTTLGA 360 NWHDPSNLGS SVSSLI

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence Send to blast

MLSNCDHEKM VLISSTTNEW PQMQQQDNIQ IDDHHQKGLN NNMSSSTSSP ATRIMEKPGQ  60
EQLQLQQQAL KCPRCDSSNT KFCYYNNYSL SQPRHFCKAC KRYWTRGGTL RNVPVGGGCR  120
KNKRVKRPGS SSSSAMDGAS SSSSSVPSNT ANNNNSNSNP PSQPSQIDQI NPLFYGVPSN  180
PFMDSPSSAS GFDLHQLNHH HAQLGLGFSS AGTFMSGDNY RNRFNPTSNS SLPSSNYSSI  240
FSTSPSTTTT TPTMASVLAS KFLNGGSFKD IQARGPSHNQ YFQSLLPFED LHIAAGNTGE  300
AGGAAKDVKI EDQAGQNRLE WNNNSNNNNV NGNMNCQNQM TEQMGLSDPS LYWSSTTLGA  360
NWHDPSNLGS SVSSLI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008225121.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008225121.1	0.0	PREDICTED: dof zinc finger protein DOF1.4
TrEMBL	M5X0R0	0.0	M5X0R0_PRUPE; Uncharacterized protein
STRING	XP_008225121.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4522	33	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28310.1	2e-35	Dof family protein