PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225122.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family SBP
Protein Properties Length: 161aa    MW: 18531.1 Da    PI: 5.9745
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225122.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP134.43.6e-4280156278
                     -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
             SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                     Cq+++C+adls+ak+y+rrhkvC vh+kap+v v g++qrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+++
  XP_008225122.1  80 CQADDCNADLSDAKQYYRRHKVCGVHAKAPAVRVGGVQQRFCQQCSRFHSLPEFDDNKRSCRRRLAGHNERRRKTSS 156
                     **************************************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.7E-3473141IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.81277154IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.83E-3978158IPR004333Transcription factor, SBP-box
PfamPF031105.2E-3380153IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MESNRAHGKR SLNYKMEEEE EEEDEEEEQE EEEDDEDTNR SSLAYGEDER RKRVLMVNSA  60
TTTPNKRGSG AGGSMARPSC QADDCNADLS DAKQYYRRHK VCGVHAKAPA VRVGGVQQRF  120
CQQCSRFHSL PEFDDNKRSC RRRLAGHNER RRKTSSEYHG E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-3570153184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225122.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225122.11e-116PREDICTED: squamosa promoter-binding-like protein 3
SwissprotQ387417e-41SBP1_ANTMA; Squamosa promoter-binding protein 1
TrEMBLM5WJC01e-92M5WJC0_PRUPE; Uncharacterized protein
STRINGXP_008225122.11e-115(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53534153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15270.16e-41squamosa promoter binding protein-like 5
Publications ? help Back to Top
  1. Klein J,Saedler H,Huijser P
    A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA.
    Mol. Gen. Genet., 1996. 250(1): p. 7-16
    [PMID:8569690]