PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225174.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family bHLH
Protein Properties Length: 186aa    MW: 20830.7 Da    PI: 7.5764
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225174.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-12960255
                    HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-.STCHHHHHHHHHHHHHHH CS
             HLH  2 rrahnerErrRRdriNsafeeLrellPkaskapskK.lsKaeiLekAveYIksLq 55
                    r+  + +E++RR++++  +++L +l+P++   +s+   s  + L  Av+YIk+Lq
  XP_008225174.1  9 RADRKTIEKNRRNQMKALYSKLNSLVPHQ---RSREvTSLPDQLDDAVNYIKKLQ 60
                    677889**********************9...88998*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.63E-6564No hitNo description
SuperFamilySSF474592.36E-12674IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.769759IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-8960IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-12973IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-41365IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0050832Biological Processdefense response to fungus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MEQCPSSSRA DRKTIEKNRR NQMKALYSKL NSLVPHQRSR EVTSLPDQLD DAVNYIKKLQ  60
TNLEKMREKK ECLMGTEKSG NNNAGFVGGE VMESFKSPQI EIEIQEMGSA LQVVLITGLD  120
YQFMFNESIR VLHEEGADIV NASFSIVEDT IFHTIHSKIG ESAPGPVAAR ISERLKKLVN  180
GRAGSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225174.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225174.11e-137PREDICTED: uncharacterized protein LOC103324840
SwissprotF4JIJ76e-49BH162_ARATH; Transcription factor bHLH162
TrEMBLA0A251PFV91e-129A0A251PFV9_PRUPE; Uncharacterized protein
STRINGXP_008225174.11e-136(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.12e-51bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]