PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225237.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 412aa    MW: 46591.9 Da    PI: 5.0482
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225237.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind110.11.6e-34141052102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+y++++d+++++++sws++++sf+v+++ efa+++Lpk+Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F +g+ +l+++
  XP_008225237.1  14 FLSKTYDMVDDASTDSIVSWSASNKSFIVWNPPEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQ---------WEFANDDFIRGQPNLMKN 99 
                     9********************999****************************************9998.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     i+r+k 
  XP_008225237.1 100 IHRRKP 105
                     ***985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467857.21E-359103IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-6310103IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.108.8E-3811103IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004477.9E-3114103IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-191437IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-195264IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405377IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MDEVQGGASS LPPFLSKTYD MVDDASTDSI VSWSASNKSF IVWNPPEFAR DLLPKFFKHN  60
NFSSFIRQLN TYGFRKIDPE QWEFANDDFI RGQPNLMKNI HRRKPVHSHS LQNLQVQGNG  120
TSLSESERQS MKDEIERLKH EKERLGVELQ RLEQERQGLE LQMQFLKERL QHMERQQQTM  180
TSFVARVLQK PGIASNPVPQ LEIHGRKRRL PRIGWSYDEA SNGNNQVASS QAGIRENADM  240
EKLEQLESFL TFWEDTIFDV GEAHIQVVSN VELDESTSCV ESAAISSIQL NVDAQPKSPG  300
IDMNSEPAVV VAPEPAAAVP PEPASSKQQS SKEQTSGITA STPTGVNDVF WEHFLTENPG  360
SVEAQEVQLE KRDSDGRKNE SKPGDHGKLW WNMRNVNNLT EQMGHLTPVE KT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A4e-25610312120Heat shock factor protein 1
5d5u_B4e-25710322129Heat shock factor protein 1
5d5v_B4e-25710322129Heat shock factor protein 1
5d5v_D4e-25710322129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00443DAPTransfer from AT4G18880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225237.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225237.10.0PREDICTED: heat stress transcription factor A-4c-like
SwissprotO494031e-128HFA4A_ARATH; Heat stress transcription factor A-4a
TrEMBLA0A314XZU90.0A0A314XZU9_PRUYE; Heat stress transcription factor A-4c-like
STRINGXP_008225237.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35683361
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18880.11e-126heat shock transcription factor A4A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]