PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225336.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 805aa    MW: 88932 Da    PI: 6.1529
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225336.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.8e-23169270199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F ++++L +gD v+F   + ++
  XP_008225336.1 169 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFISQKNLVSGDAVLFL--RGEN 260
                     99****************************963.3445679************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_008225336.1 261 GELRLGIRRA 270
                     999****996 PP
2Auxin_resp119.72.3e-39295376182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+stks+F+v+Y+Pras++eFv++++k+++++ ++v+ G+Rfkm+f+ +ds+err+sG+v+g+sdldp+ WpnSkWr+L
  XP_008225336.1 295 VANAISTKSMFHVFYSPRASHAEFVIPYQKYVRSIANPVTTGTRFKMRFDRDDSPERRCSGVVTGISDLDPYGWPNSKWRCL 376
                     689******************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-44161280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-40162279IPR015300DNA-binding pseudobarrel domain
CDDcd100173.39E-22167269No hitNo description
PROSITE profilePS5086312.83169271IPR003340B3 DNA binding domain
PfamPF023623.5E-21169270IPR003340B3 DNA binding domain
SMARTSM010192.2E-23169271IPR003340B3 DNA binding domain
PfamPF065073.9E-33295376IPR010525Auxin response factor
SuperFamilySSF542777.85E-10676756No hitNo description
PROSITE profilePS5174521.263677761IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 805 aa     Download sequence    Send to blast
MEIDLNHAVT EVEKSAYCNG DCDKVGGGCV YCLSSSTSSS SSNSSSAPVA SSIYLELWHA  60
CAGPLISLPK KGNVIVYFPQ GHLEQVASSS PFSSMEMPTF DLQPQIFCKV VNVQLLANKE  120
NDEVYTHVTL LPQPEPELVG TNLDGKELEE LGVDEGDGGS PTKSTPHMFC KTLTASDTST  180
HGGFSVPRRA AEDCFPPLDY KQQRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSI  240
FISQKNLVSG DAVLFLRGEN GELRLGIRRA VRPRNGLPDS IVGNQNSYPS VLSLVANAIS  300
TKSMFHVFYS PRASHAEFVI PYQKYVRSIA NPVTTGTRFK MRFDRDDSPE RRCSGVVTGI  360
SDLDPYGWPN SKWRCLMVRW DEDIGNDHQE RVSPWEIDPS VSLPPLSIQS SPRLMKKLRT  420
SLQATPPNNS ITAGGGGFMD FEESVKSSKV LQGQENIGFI SPLYGCDTVN RPQDFEMQTP  480
THPSLASNAT QKATIGELMR ARHSTYTGFA ESDRFPKVLQ GQEICPLRSL TGKANFTLGD  540
WESNLGCTSF NIYQAPKPNF FSLASESLPN IYFPYGDIRR AGQDPVICSN GTNLPRESMK  600
INPYSMQMGV TRNEAGRPNK PSEHKPQESS SAPPTLVPNP RNPNDEDFNG TVTGCKLFGF  660
SLTGENPTPN SQSSSKRSCT KVHKQGSLVG RAIDLSKLNG YGDLLSELER LFSMEGLLRD  720
SDKGWRILYT DSENDVMVVG DDPWHEFCNV VSKIHIYTQE EVEKMTIGMI SDDTQSCLEQ  780
APVMLEMSKS SSVSQPDSSP TVIRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-123393992354Auxin response factor 1
4ldy_B1e-123393992354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225336.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225336.10.0PREDICTED: auxin response factor 4 isoform X1
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A314XKT10.0A0A314XKT1_PRUYE; Auxin response factor
STRINGXP_008225336.10.0(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF52363252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]