PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225341.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family ARF
Protein Properties Length: 803aa    MW: 88672.6 Da    PI: 6.0569
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225341.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3733.7e-23169270199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++p++ ae++      + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ F ++++L +gD v+F   + ++
  XP_008225341.1 169 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFISQKNLVSGDAVLFL--RGEN 260
                     99****************************963.3445679************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+++++r+
  XP_008225341.1 261 GELRLGIRRA 270
                     999****996 PP
2Auxin_resp111.96.1e-37295374182
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                     +a+a+stks+F+v+Y+Pras++eFv++++k+++++ ++v+ G+Rfkm+f+ +ds+er+  G+v+g+sdldp+ WpnSkWr+L
  XP_008225341.1 295 VANAISTKSMFHVFYSPRASHAEFVIPYQKYVRSIANPVTTGTRFKMRFDRDDSPERS--GVVTGISDLDPYGWPNSKWRCL 374
                     689******************************************************9..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.66E-44161280IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.8E-40162279IPR015300DNA-binding pseudobarrel domain
CDDcd100173.38E-22167269No hitNo description
PROSITE profilePS5086312.83169271IPR003340B3 DNA binding domain
PfamPF023623.4E-21169270IPR003340B3 DNA binding domain
SMARTSM010192.2E-23169271IPR003340B3 DNA binding domain
PfamPF065071.6E-30295374IPR010525Auxin response factor
SuperFamilySSF542777.85E-10674754No hitNo description
PROSITE profilePS5174521.263675759IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0010050Biological Processvegetative phase change
GO:0010158Biological Processabaxial cell fate specification
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 803 aa     Download sequence    Send to blast
MEIDLNHAVT EVEKSAYCNG DCDKVGGGCV YCLSSSTSSS SSNSSSAPVA SSIYLELWHA  60
CAGPLISLPK KGNVIVYFPQ GHLEQVASSS PFSSMEMPTF DLQPQIFCKV VNVQLLANKE  120
NDEVYTHVTL LPQPEPELVG TNLDGKELEE LGVDEGDGGS PTKSTPHMFC KTLTASDTST  180
HGGFSVPRRA AEDCFPPLDY KQQRPSQELV AKDLHGVEWR FRHIYRGQPR RHLLTTGWSI  240
FISQKNLVSG DAVLFLRGEN GELRLGIRRA VRPRNGLPDS IVGNQNSYPS VLSLVANAIS  300
TKSMFHVFYS PRASHAEFVI PYQKYVRSIA NPVTTGTRFK MRFDRDDSPE RSGVVTGISD  360
LDPYGWPNSK WRCLMVRWDE DIGNDHQERV SPWEIDPSVS LPPLSIQSSP RLMKKLRTSL  420
QATPPNNSIT AGGGGFMDFE ESVKSSKVLQ GQENIGFISP LYGCDTVNRP QDFEMQTPTH  480
PSLASNATQK ATIGELMRAR HSTYTGFAES DRFPKVLQGQ EICPLRSLTG KANFTLGDWE  540
SNLGCTSFNI YQAPKPNFFS LASESLPNIY FPYGDIRRAG QDPVICSNGT NLPRESMKIN  600
PYSMQMGVTR NEAGRPNKPS EHKPQESSSA PPTLVPNPRN PNDEDFNGTV TGCKLFGFSL  660
TGENPTPNSQ SSSKRSCTKV HKQGSLVGRA IDLSKLNGYG DLLSELERLF SMEGLLRDSD  720
KGWRILYTDS ENDVMVVGDD PWHEFCNVVS KIHIYTQEEV EKMTIGMISD DTQSCLEQAP  780
VMLEMSKSSS VSQPDSSPTV IRV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A1e-120393972354Auxin response factor 1
4ldy_B1e-120393972354Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225341.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225341.10.0PREDICTED: auxin response factor 4 isoform X2
SwissprotQ9ZTX90.0ARFD_ARATH; Auxin response factor 4
TrEMBLA0A2L1GH010.0A0A2L1GH01_9ROSA; Auxin response factor
STRINGXP_008225336.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60450.10.0auxin response factor 4
Publications ? help Back to Top
  1. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  2. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]
  3. Pashkovskiy PP,Kartashov AV,Zlobin IE,Pogosyan SI,Kuznetsov VV
    Blue light alters miR167 expression and microRNA-targeted auxin response factor genes in Arabidopsis thaliana plants.
    Plant Physiol. Biochem., 2016. 104: p. 146-54
    [PMID:27031426]
  4. Matsumura Y, et al.
    A genetic link between epigenetic repressor AS1-AS2 and a putative small subunit processome in leaf polarity establishment of Arabidopsis.
    Biol Open, 2016. 5(7): p. 942-54
    [PMID:27334696]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  6. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]