PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008225447.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

LBD

Protein Properties

Length: 366aa MW: 40552 Da PI: 7.0845

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008225447.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	106.1	2.9e-33	16	116	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlkael 94 aCaaC+++r+kC +dCv+apyf e++++f++vhk+FG+sn +kllk+l++++ r +a++s ++eA+ + +dPv+G +g +++l+++++ l+ l XP_008225447.1 16 ACAACRHQRKKCDDDCVMAPYFTTEKEEAFRAVHKIFGVSNTSKLLKKLEDKNhRGRAAESFIWEACTWKQDPVNGPLGKYRQLEREIALLRDAL 110 7**********************************************66655************************************999 PP DUF260 95 allkee 100 ++++ee XP_008225447.1 111 QRQQEE 116 998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.139	15	117	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.8E-32	16	114	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 366 aa Download sequence Send to blast
MSMVSGNGGE LNSRHACAAC RHQRKKCDDD CVMAPYFTTE KEEAFRAVHK IFGVSNTSKL 60 LKKLEDKNHR GRAAESFIWE ACTWKQDPVN GPLGKYRQLE REIALLRDAL QRQQEEQEQE 120 QGKDCLALPS STVEQESIAL DQGSNNGSDM TYGYANQNLA PANGTYSSLL QGQEVTVRKG 180 LVDNNCVTGS NYQPAAISQG GQQALGQGRQ ETQRVIGFGP PLMPFDPTIQ GGNGRPMRFE 240 GQGRGIAGLD CATNSPMGPN IYGQIGGHVA FDPSQRQFGQ VGAAQIGPKF SEGFPGHMRA 300 ITQIQDAGFL PYHHHLLHHQ PIHMQRQGMS EAQNHHSFQQ YSFNNHQSYE NGQDVEHFNQ 360 VKSERR

Sequence ? help Back to Top

Protein Sequence Length: 366 aa Download sequence Send to blast

MSMVSGNGGE LNSRHACAAC RHQRKKCDDD CVMAPYFTTE KEEAFRAVHK IFGVSNTSKL  60
LKKLEDKNHR GRAAESFIWE ACTWKQDPVN GPLGKYRQLE REIALLRDAL QRQQEEQEQE  120
QGKDCLALPS STVEQESIAL DQGSNNGSDM TYGYANQNLA PANGTYSSLL QGQEVTVRKG  180
LVDNNCVTGS NYQPAAISQG GQQALGQGRQ ETQRVIGFGP PLMPFDPTIQ GGNGRPMRFE  240
GQGRGIAGLD CATNSPMGPN IYGQIGGHVA FDPSQRQFGQ VGAAQIGPKF SEGFPGHMRA  300
ITQIQDAGFL PYHHHLLHHQ PIHMQRQGMS EAQNHHSFQQ YSFNNHQSYE NGQDVEHFNQ  360
VKSERR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-16	17	116	12	110	LOB family transfactor Ramosa2.1
5ly0_B	2e-16	17	116	12	110	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008225447.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008225447.1	0.0	PREDICTED: LOB domain-containing protein 6-like
TrEMBL	A0A251PJJ5	0.0	A0A251PJJ5_PRUPE; Uncharacterized protein
STRING	XP_008225447.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14786	13	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	5e-26	LOB domain-containing protein 2