PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008225482.1
Organism
Prunus mume
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NF-YC
Protein Properties Length: 221aa    MW: 25077.5 Da    PI: 10.3456
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008225482.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC44.53.3e-14111203799
           NF-YC   7 ekqiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 
                     e+++e+++++k  ++P+ r+k+i+++++   +is +a  l+ ka e f+ ++   +   + + ++++l    ++++v++ + +dfl d vp++
  XP_008225482.1 111 EEEVEEKEEVKSYTFPMERVKRIIRSEDSEMRISHDAVFLVNKATEKFLQKFCEDAHACCVKDRKKSLAYKHLSSVVSKRKRYDFLSDYVPEK 203
                     46799***********************999***********************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.47E-18105202IPR009072Histone-fold
PfamPF008081.2E-15124187IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.5E-22125202IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MATPRKATTP KKSKETKKPS SKAITPKKTQ ETKNPSIKKT PETKKPGTKK TISDKNQTSN  60
GNVSDSDVEE IPSSSSESLK DTKQDGGKIT KTPTPKSKHS NKKRKQKQEE EEEVEEKEEV  120
KSYTFPMERV KRIIRSEDSE MRISHDAVFL VNKATEKFLQ KFCEDAHACC VKDRKKSLAY  180
KHLSSVVSKR KRYDFLSDYV PEKVKAEDAL AKRKLAEAKA D
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1418RKATTPKKSKETKKP
2173191RKKSLAYKHLSSVVSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_008225482.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008225482.11e-157PREDICTED: DNA polymerase epsilon subunit C isoform X1
TrEMBLM5W7G11e-124M5W7G1_PRUPE; Uncharacterized protein
STRINGXP_008225482.11e-156(Prunus mume)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF120163031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07980.11e-29nuclear factor Y, subunit C10