PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_008225730.1

Organism

Prunus mume

Taxonomic ID

102107

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus

Family

Trihelix

Protein Properties

Length: 349aa MW: 38610.4 Da PI: 8.8437

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_008225730.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	52	1.9e-16	22	112	2	79
trihelix 2 WtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstc 79 Wt e++ Liea++ ++er +++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk++e e+++ ++e+ s + XP_008225730.1 22 WTVGETMILIEAKKMDDERRMKRSgdaagsetrsskPAELRWKWVEDYCWKKGCLRSQNQCNDKWDNLMRDYKKVREYERREgKEEAASYW 112 ***********96655555432234444445444999***************************************97334444333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.69	14	90	IPR017877	Myb-like domain
Pfam	PF13837	3.8E-13	21	115	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 349 aa Download sequence Send to blast
MADQGGNGTS SVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRSGDAAG SETRSSKPAE 60 LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RREGKEEAAS YWKLEKSERK 120 DRNLPTNMVP QIYEALVDVV EKREAGHHQI RVVGGASVSG SNVPNPTIGY VVERPIISTS 180 VHQASLPPPV LQHHISVPPI AALPLLPPAP LAVQPPPTLP YSQPMPTVDS ETSHEHSDSP 240 AKRRRRASGG GGGGGDQGTS GTVSASTSSE VGTAISRGAS MIAEALQGCE EREERRHRDL 300 LSLHERRLQI EETKTEINRQ GINGLIDAIN KLADSIHSLA SNKNQSPPK

Sequence ? help Back to Top

Protein Sequence Length: 349 aa Download sequence Send to blast

MADQGGNGTS SVIMRDYRKG NWTVGETMIL IEAKKMDDER RMKRSGDAAG SETRSSKPAE  60
LRWKWVEDYC WKKGCLRSQN QCNDKWDNLM RDYKKVREYE RREGKEEAAS YWKLEKSERK  120
DRNLPTNMVP QIYEALVDVV EKREAGHHQI RVVGGASVSG SNVPNPTIGY VVERPIISTS  180
VHQASLPPPV LQHHISVPPI AALPLLPPAP LAVQPPPTLP YSQPMPTVDS ETSHEHSDSP  240
AKRRRRASGG GGGGGDQGTS GTVSASTSSE VGTAISRGAS MIAEALQGCE EREERRHRDL  300
LSLHERRLQI EETKTEINRQ GINGLIDAIN KLADSIHSLA SNKNQSPPK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_008225730.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_008225730.1	0.0	PREDICTED: uncharacterized protein LOC103325346
TrEMBL	M5X5C2	0.0	M5X5C2_PRUPE; Uncharacterized protein
STRING	XP_008225730.1	0.0	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	5e-64	Trihelix family protein